PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015892697.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 1148aa MW: 128716 Da PI: 9.1143

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015892697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.8e-10	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a + +R+ +++ XP_015892697.1 46 QWSEQELERFYEAYRKHGKD-WKKVATVVR-NRSVEMI 81 6***************99.*****.98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.54E-10	42	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.005	42	95	IPR017884	SANT domain
SMART	SM00717	4.7E-5	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	8.9E-9	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-5	46	82	IPR009057	Homeodomain-like
CDD	cd00167	2.47E-6	47	81	No hit	No description
SMART	SM01135	7.8E-56	623	724	IPR033471	DIRP domain
Pfam	PF06584	1.1E-32	623	723	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1148 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYVNEV SSYKTGENAN KSRQKKRKLS DMLGPQWSEQ ELERFYEAYR 60 KHGKDWKKVA TVVRNRSVEM IEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYCVLGGSDS 120 EQESNDGTGA SHKPQKRARG QFQSNTSKGL DEHFPDVSQS QSVASSNGCL SLLKKRRSGI 180 MPHAVRKRTP RVPVSYSDKD NRERKTPPSK QNLKHNIDPT GDDVAHEIAM ALTEASQKGG 240 SPQGSWISNR KVEGAMPTLY RNGERMSAKP EKTITKLCYG GVDKGGCELS LGSTEADKRD 300 YDRNESYLMD KEGAEAVEFQ QKGKRYHVNK PDVKDSVNDL LDGIKEAGSG TEEQKLSTAK 360 GRSIGKGLRK RSKKALFVRD EDSPFDALKT LADMSLMMPE TPTDPEPAVR DKGENFDVAI 420 RSTLKGSHLV LGVEDTAFTS SKLEKAKEGT HHFNAGIQKR KRKSFPFKMY KNEGQTDSHL 480 SDNQKLEVCN CQPKTAMDWI KKSTSKGKRS SHSSPNLKQG KLVKPLETTS SSTYGKSEET 540 DSILSSIQVP SANQPPTKMR NRWKKQMQKP PSKIDTKTSE NVLDDQSKLP ASSLHNKELN 600 LEERLSNCLS WYQAQRWSIF EWFYSAIDYP WFAKREFVEY LNHVGLGHVP RLTRVEWGVI 660 RSSLGKPRRF SEHFLKEEKD KLNQYRESVR RHYSELRAGT REGLPTDLAR PLSVGQRVIA 720 IHPRTRKIQD GSILTVDHSR CYVQFDRPDL GVEYVMDIDC MPLNPLENLP ASFTRQNSAV 780 DRLLENLKEI RINEQLKEGK SDDCVKIAST ENQDNICKLS KHSEGYSSSS ELEAKVVHGE 840 ATKTQKVANS QPSILAQIQA KEDDVQALSE LTRALDKKEV VVSELKCLHD ELMENQKDGD 900 NSLKDSEPFK KQYAAILLRL NEVNEQVSSA LLCLRQRNTY QGSSQNMLLK AMGSLNDPGS 960 HSSSCVCSTC RIHEPGSNVA EIVESSRIRA QKMVDIAMQA LSSLKMMENG PRRIEEAIDF 1020 INKRLSEEDF GMLTCRPCTD SFVASPDQLT AGTSKPSSTR DPPDPASTTS SNKNETKFLS 1080 ELIAHCIATL LMIQKCTERQ FPPADVARVL DSAVTSLQPF CSQNVPVYAE IQKCMGILRN 1140 QILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1148 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYVNEV SSYKTGENAN KSRQKKRKLS DMLGPQWSEQ ELERFYEAYR  60
KHGKDWKKVA TVVRNRSVEM IEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYCVLGGSDS  120
EQESNDGTGA SHKPQKRARG QFQSNTSKGL DEHFPDVSQS QSVASSNGCL SLLKKRRSGI  180
MPHAVRKRTP RVPVSYSDKD NRERKTPPSK QNLKHNIDPT GDDVAHEIAM ALTEASQKGG  240
SPQGSWISNR KVEGAMPTLY RNGERMSAKP EKTITKLCYG GVDKGGCELS LGSTEADKRD  300
YDRNESYLMD KEGAEAVEFQ QKGKRYHVNK PDVKDSVNDL LDGIKEAGSG TEEQKLSTAK  360
GRSIGKGLRK RSKKALFVRD EDSPFDALKT LADMSLMMPE TPTDPEPAVR DKGENFDVAI  420
RSTLKGSHLV LGVEDTAFTS SKLEKAKEGT HHFNAGIQKR KRKSFPFKMY KNEGQTDSHL  480
SDNQKLEVCN CQPKTAMDWI KKSTSKGKRS SHSSPNLKQG KLVKPLETTS SSTYGKSEET  540
DSILSSIQVP SANQPPTKMR NRWKKQMQKP PSKIDTKTSE NVLDDQSKLP ASSLHNKELN  600
LEERLSNCLS WYQAQRWSIF EWFYSAIDYP WFAKREFVEY LNHVGLGHVP RLTRVEWGVI  660
RSSLGKPRRF SEHFLKEEKD KLNQYRESVR RHYSELRAGT REGLPTDLAR PLSVGQRVIA  720
IHPRTRKIQD GSILTVDHSR CYVQFDRPDL GVEYVMDIDC MPLNPLENLP ASFTRQNSAV  780
DRLLENLKEI RINEQLKEGK SDDCVKIAST ENQDNICKLS KHSEGYSSSS ELEAKVVHGE  840
ATKTQKVANS QPSILAQIQA KEDDVQALSE LTRALDKKEV VVSELKCLHD ELMENQKDGD  900
NSLKDSEPFK KQYAAILLRL NEVNEQVSSA LLCLRQRNTY QGSSQNMLLK AMGSLNDPGS  960
HSSSCVCSTC RIHEPGSNVA EIVESSRIRA QKMVDIAMQA LSSLKMMENG PRRIEEAIDF  1020
INKRLSEEDF GMLTCRPCTD SFVASPDQLT AGTSKPSSTR DPPDPASTTS SNKNETKFLS  1080
ELIAHCIATL LMIQKCTERQ FPPADVARVL DSAVTSLQPF CSQNVPVYAE IQKCMGILRN  1140
QILALVPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015892697.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892697.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_015892698.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_015892700.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2I4F343	0.0	A0A2I4F343_JUGRE; protein ALWAYS EARLY 3 isoform X3
STRING	XP_008223159.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]