PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015892526.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 1002aa MW: 110020 Da PI: 4.705

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015892526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.7e-11	853	895	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++av+q+G++ ++ I + ++ Rt+ q+k+++ k XP_015892526.1 853 TRWSKQDTELFYQAVRQFGTD-FSMIQQLFP-DRTRHQIKLKFKK 895 59*****************.*****.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	3.3E-29	845	929	No hit	No description
PROSITE profile	PS51293	10.055	850	898	IPR017884	SANT domain
SMART	SM00717	7.6E-9	851	899	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	852	895	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.94E-10	853	901	IPR009057	Homeodomain-like
CDD	cd00167	1.73E-7	854	895	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MDPFEDLFSE PSATVAARVG QKFKPKAKPR PRKETSASVP LVVTSDTKGK VEILCATSSE 60 TTKSTLPVGV VDDGLEIPHG SCLAITAANG TTEALENCED FLSSGLKDIT ETKNDSTEVV 120 APNWHLGFVD GSHQEVAASN IGVNEHSGFR KPESEADLLH LNVDPFTDNN VEPDASNRSE 180 QETFPSIPST LPDTIEEEPV GLDSLEFSQH GDVGKSAKKV DSVQFDSDPF GDILFEPATS 240 NTCTSHKFRP KPKPQPRKGS PTAVASTLPS VMGSPNLDTV QSVQSVDVGK GRLADQGESS 300 LATSEILGRK EPLKSIEDPC SSVLLSDTSR SLLLGDSSQS LPVDALQPEV PVLDGSGDWH 360 SSFGKPVGEN ADFFSGLECL DDFLTQPTSG MARDAIKSHC KVDMDIQHKN KFSTSFCVNN 420 DGKDSISHSE VETLSEENSC APAHGSIVVC DAAQSQTCSD YDTTQDPVSC NGALVSDKYD 480 EAQIGNGRSM TKVTGSLFDF ETLDAISEDT MASGKRAAKF QPKPKLKKGK EKPLGVESAR 540 HVQAEHLVSF ETRCMREGSI PHLEVLDDTS ARFGDSVALG STSEIQGNSE PKNVAEITRS 600 GDDILGDVMN SEDAPDMPEE VINKSGTQKA FTESIPLRKH KTSSTNSEGI EGEKSSRELR 660 KRSAQQLVDE PVDEACEPPS ISNTDVDEDD DDEYRENRPS QKKKTPRKPK KPLPESDKPV 720 RKRTKANEAP DQSTKVPPKK FSHSTRRNRR HVNKDLLDMP EDEIDPQKLS IKDLILLAEH 780 RERLAIKEAS KSNTTQANQS SENFLNKEAS HNEEDSFASE HDRYSEDGQE SCGIKPSSSY 840 INYQSFMNRT PTTRWSKQDT ELFYQAVRQF GTDFSMIQQL FPDRTRHQIK LKFKKEERQY 900 PLRLSEAVTN RAKDHSHFES VIERLQQDAS HAKQEYDRDD SIGVAGKEAE VAEGPIHDAS 960 AGATKSEFGD NVVKVQEADV EVHSPAKSDK SDDSDRWFDY DY

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MDPFEDLFSE PSATVAARVG QKFKPKAKPR PRKETSASVP LVVTSDTKGK VEILCATSSE  60
TTKSTLPVGV VDDGLEIPHG SCLAITAANG TTEALENCED FLSSGLKDIT ETKNDSTEVV  120
APNWHLGFVD GSHQEVAASN IGVNEHSGFR KPESEADLLH LNVDPFTDNN VEPDASNRSE  180
QETFPSIPST LPDTIEEEPV GLDSLEFSQH GDVGKSAKKV DSVQFDSDPF GDILFEPATS  240
NTCTSHKFRP KPKPQPRKGS PTAVASTLPS VMGSPNLDTV QSVQSVDVGK GRLADQGESS  300
LATSEILGRK EPLKSIEDPC SSVLLSDTSR SLLLGDSSQS LPVDALQPEV PVLDGSGDWH  360
SSFGKPVGEN ADFFSGLECL DDFLTQPTSG MARDAIKSHC KVDMDIQHKN KFSTSFCVNN  420
DGKDSISHSE VETLSEENSC APAHGSIVVC DAAQSQTCSD YDTTQDPVSC NGALVSDKYD  480
EAQIGNGRSM TKVTGSLFDF ETLDAISEDT MASGKRAAKF QPKPKLKKGK EKPLGVESAR  540
HVQAEHLVSF ETRCMREGSI PHLEVLDDTS ARFGDSVALG STSEIQGNSE PKNVAEITRS  600
GDDILGDVMN SEDAPDMPEE VINKSGTQKA FTESIPLRKH KTSSTNSEGI EGEKSSRELR  660
KRSAQQLVDE PVDEACEPPS ISNTDVDEDD DDEYRENRPS QKKKTPRKPK KPLPESDKPV  720
RKRTKANEAP DQSTKVPPKK FSHSTRRNRR HVNKDLLDMP EDEIDPQKLS IKDLILLAEH  780
RERLAIKEAS KSNTTQANQS SENFLNKEAS HNEEDSFASE HDRYSEDGQE SCGIKPSSSY  840
INYQSFMNRT PTTRWSKQDT ELFYQAVRQF GTDFSMIQQL FPDRTRHQIK LKFKKEERQY  900
PLRLSEAVTN RAKDHSHFES VIERLQQDAS HAKQEYDRDD SIGVAGKEAE VAEGPIHDAS  960
AGATKSEFGD NVVKVQEADV EVHSPAKSDK SDDSDRWFDY DY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5n9g_C	4e-12	843	942	70	170	Transcription factor TFIIIB component B'' homolog
5n9g_H	4e-12	843	942	70	170	Transcription factor TFIIIB component B'' homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015892526.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892526.1	0.0	uncharacterized protein LOC107426769 isoform X1
Refseq	XP_015892528.1	0.0	uncharacterized protein LOC107426769 isoform X1
Refseq	XP_024933089.1	0.0	uncharacterized protein LOC107426769 isoform X1
Refseq	XP_024933090.1	0.0	uncharacterized protein LOC107426769 isoform X1
Refseq	XP_024933091.1	0.0	uncharacterized protein LOC107426769 isoform X1
TrEMBL	A0A2P5DVP6	0.0	A0A2P5DVP6_TREOI; TFIIIB transcription factor
STRING	XP_010105352.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-50	MYB_related family protein