PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892441.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 697aa    MW: 77349.6 Da    PI: 6.6642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07104128526
                     --SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                     +C+  artG   tC+y d+C+F+H+
  XP_015892441.1 104 ICPEVARTGdvsTCPYNDKCRFSHD 128
                     7***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4699130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4103130IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.704.7E-70341584IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.78E-60345658No hitNo description
CDDcd028012.85E-85345580No hitNo description
PfamPF012074.1E-48348582IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360429447IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDESQAELVQ DHPIVSSGST PSASNGGTQQ TPEELVARAI APVKREFLRP PPVRPSSSSS  60
TTNKDDAVTD AKDKPAQSAL DKEKKSKRQL KRERRQQQKS ALSICPEVAR TGDVSTCPYN  120
DKCRFSHDVE AFMALKADDL EGKCPFISDD EPCPYGLACR FSKTHRSGVS VGNANTRRKG  180
SEVNGLSKDV QKLLWKNKMK FPKADAKLKA LGLLGPANSK SKNLVDKEVD QLDSNDCHVN  240
NENGCVDLTN DIDVKGDISA KIEEEDAVNE TSANDEHPPP LKKPKCATEK CCPGRAEDES  300
VGEKVVSDSS IEPEIQVAAD TIHPETERSL KLHPRERKII DFREKLYLAP LTTVGNLPFR  360
RVCKFLGADV TCGEMAMCTN LLQGQASEWA LLRRHSSEDL FGVQICGAYA DTVTRAVELV  420
DQECVVDFID INMGCPIDIV VNKGAGSALL TKPMRMKGII EAASGTTDKH LTVKVRTAYF  480
EGKNRVHSLI ADIGGWGASA VTIHGRSRQQ RYSKLADWEY IYECARKAPD ALQVLGNGDI  540
FSYLDWNKHK ADCPELSSCM IARGALVKPW IFTEIKEQRH WDISSGERLN ILMDFARFGL  600
EHWGSDTKGV ETTRRFLLEW LSYTCRYIPV GLLDVIPQRL NWRPPSYFGR DDLETLMASD  660
SAADWIRISE MLLGKVPDGF TFAPKHKSNA YDRAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A2e-2234258927266tRNA-dihydrouridine synthase B
6ei9_B2e-2234258927266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892441.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2P5AK910.0A0A2P5AK91_PARAD; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_010095677.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]