PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891991.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HB-other

Protein Properties

Length: 997aa MW: 111300 Da PI: 9.5375

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.3e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F+ + +s++e +e+++ g+t +qV+ +F +R + +k XP_015891991.1 69 KRPRDLLNPKAVKYMQSVFAIKDAISKKESREISALYGVTVTQVREFFTSQRSRVRK 125 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.685	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-6	68	128	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.35E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.0E-6	69	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MEALKEDFSE LEIGSSAQSF QKFLNSQREL FHSQIDQLQK IVVTQCQLTG VNPLSQEMAA 60 GALSINIGKR PRDLLNPKAV KYMQSVFAIK DAISKKESRE ISALYGVTVT QVREFFTSQR 120 SRVRKVVRLS REKTIRSNEY TEPHDGISAT SGALMPIDPV PLNTVVPTSV EEAPSCSTQD 180 DALPGIDDLD KQFVENIFTL MRKEETFSGQ VKLMEWILRI QNSTVLCWFL NKGGVMILAT 240 WLSQAATEEQ TTVLFVILKV LCHLPLHKAV PVHMSAVLQS VNRLRFYRTS DISNRARVLL 300 ARLSKLLARS QALKKPNGMK SSSDAQQELM LKQSIDDVVG YEPWQSNIDF TGNILASPYD 360 SSENFRKSEP MQTLKLLPAS SDDSNKKQVL GITQIKERRK VQMVEQPGQK TAGRSTQAAR 420 AAPISQGRPM SADDIQKAKM RAQWMQSKYG KAGSSNSNKE AKIQSSNKSS TSQASILPLA 480 SKVPVRPNIE EQKKPVSLLS KVPNILEASL DQKMIADSKE PWWEKCRRVQ KLWQTPPEIK 540 LNHQWSVGAG ENSKEVEVQK NRNNREKETI YQRIQEIPSN PKEPWDLEMD YDDTLTPEIP 600 TQQLPDADNT ETQATNQAIN NVGTQGAPSQ RVNNYASLQS ITTSQTGSTS IAEPDLELLA 660 VLLKNPELVF ALTSGQASNL SSEETVKLLD MIKAGGSGLT SNMNGLDRQG EDNIGVSLPS 720 PTPSSNPGTT GWRQEAVRNP FSQQTVLPNR ATYISSEVAT ANSVPPPHIS AAHISSLRQS 780 ASIPPYSHQT PASDVVMKNS PLTVTPFHNL HSASLPSMRV ESTSSVKPSL ISNAEERQRF 840 PIPSNTLLPT TARPQIHPQQ QQLLSGPSDP YTPVYSKQIG KPNPASESWR TTQGLPSFYR 900 PLNQNNYNAS LVGPEQPQLM SGPKWEGNEY VEEDDFESWS PDNSPVRNPE YMMGRSFPDA 960 RTNPGREYRP ERMRQRNSSG YRDQNRYGNR RWRDRRR

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MEALKEDFSE LEIGSSAQSF QKFLNSQREL FHSQIDQLQK IVVTQCQLTG VNPLSQEMAA  60
GALSINIGKR PRDLLNPKAV KYMQSVFAIK DAISKKESRE ISALYGVTVT QVREFFTSQR  120
SRVRKVVRLS REKTIRSNEY TEPHDGISAT SGALMPIDPV PLNTVVPTSV EEAPSCSTQD  180
DALPGIDDLD KQFVENIFTL MRKEETFSGQ VKLMEWILRI QNSTVLCWFL NKGGVMILAT  240
WLSQAATEEQ TTVLFVILKV LCHLPLHKAV PVHMSAVLQS VNRLRFYRTS DISNRARVLL  300
ARLSKLLARS QALKKPNGMK SSSDAQQELM LKQSIDDVVG YEPWQSNIDF TGNILASPYD  360
SSENFRKSEP MQTLKLLPAS SDDSNKKQVL GITQIKERRK VQMVEQPGQK TAGRSTQAAR  420
AAPISQGRPM SADDIQKAKM RAQWMQSKYG KAGSSNSNKE AKIQSSNKSS TSQASILPLA  480
SKVPVRPNIE EQKKPVSLLS KVPNILEASL DQKMIADSKE PWWEKCRRVQ KLWQTPPEIK  540
LNHQWSVGAG ENSKEVEVQK NRNNREKETI YQRIQEIPSN PKEPWDLEMD YDDTLTPEIP  600
TQQLPDADNT ETQATNQAIN NVGTQGAPSQ RVNNYASLQS ITTSQTGSTS IAEPDLELLA  660
VLLKNPELVF ALTSGQASNL SSEETVKLLD MIKAGGSGLT SNMNGLDRQG EDNIGVSLPS  720
PTPSSNPGTT GWRQEAVRNP FSQQTVLPNR ATYISSEVAT ANSVPPPHIS AAHISSLRQS  780
ASIPPYSHQT PASDVVMKNS PLTVTPFHNL HSASLPSMRV ESTSSVKPSL ISNAEERQRF  840
PIPSNTLLPT TARPQIHPQQ QQLLSGPSDP YTPVYSKQIG KPNPASESWR TTQGLPSFYR  900
PLNQNNYNAS LVGPEQPQLM SGPKWEGNEY VEEDDFESWS PDNSPVRNPE YMMGRSFPDA  960
RTNPGREYRP ERMRQRNSSG YRDQNRYGNR RWRDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891991.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891991.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2I4FUX1	0.0	A0A2I4FUX1_JUGRE; homeobox protein LUMINIDEPENDENS isoform X2
STRING	XP_008235014.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-157	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]