PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891971.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 700aa    MW: 76873.2 Da    PI: 6.7092
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +
  XP_015891971.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 211
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_015891971.1 212 SGDLCVGIRRA 222
                     9999****997 PP
2Auxin_resp1141.3e-37290373183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ as++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWp+S+Wr+L+
  XP_015891971.1 290 AATLASKGQPFEVVYYPRASTPEFCVKASLVKAALQIHWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPQRWPESPWRLLQ 373
                     68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-38112225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-29114224IPR015300DNA-binding pseudobarrel domain
CDDcd100176.94E-21120221No hitNo description
SMARTSM010194.1E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028121223IPR003340B3 DNA binding domain
PfamPF023628.0E-22121222IPR003340B3 DNA binding domain
PfamPF065075.5E-33290373IPR010525Auxin response factor
PROSITE profilePS5174518.052614694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MITFMDSKEK MKEVEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH ACGPVDFRNC  60
PRVPPYILCT VSAIKFMADA ETDEVYAKLR LAPLSANEPG YEDDGIGGIS GSEPQDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ESGDLCVGIR RAKRGIGGGP ESSSGWNPAV  240
GNCATPYGGF STFLREDENK LMRNRNGNSS NMNGSLMGKG KVRPESVIEA ATLASKGQPF  300
EVVYYPRAST PEFCVKASLV KAALQIHWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD  360
PQRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIQISPFSPP RKKLRLPPHP  420
DFPLDGQIPM PTFSGNILGP SSSFGCLSDQ YPAGMQGARH AHYGLSLSDL HLNKLQSGLF  480
PIGLTPLDHS ATPTKVSSNI MNQKPSMSEN VSCLLSMTST RTLKKSDDAK APQLVLFGQP  540
ILTEQQISLS CSSDTVSPVL TGNSSSDGNV DRMANFSDGS GSALQQQGVP ERSSCDGFQW  600
YKDNRQETEA NLEIGHCKVF MESEDVGRTL DLSLLGSYDE LYRKLADMFG IESSEPLNHV  660
LYRDVTGAVK HIGEEPFSAF MKAARRLTIL MDSGSDNLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-791839451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891971.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A314ZP650.0A0A314ZP65_PRUYE; Auxin response factor
STRINGEMJ092520.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]