PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891940.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 188aa    MW: 20769.1 Da    PI: 5.7303
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.71.1e-5535130297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kcq+ekrkt+ngdd++walatlGf+dy+eplk yl+kyrelege
  XP_015891940.1  35 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCQKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGE 129
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_015891940.1 130 K 130
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5433146IPR009072Histone-fold
SuperFamilySSF471138.85E-4237153IPR009072Histone-fold
PfamPF008082.4E-2840104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.7E-206886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.7E-2087105No hitNo description
PRINTSPR006154.7E-20106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVDNIGSNSE GEGFKYNFTA AGAGSTSGED IGVIKEQDRL LPIANVGRIM KQILPPNAKI  60
SKEAKETMQE CVSEFISFVT GEASEKCQKE KRKTVNGDDI CWALATLGFD DYAEPLKRYL  120
HKYRELEGEK AHQTNKPSGS HDEGKINEEN SIYGGHDSAD SPRNPTVPPL KFNVLERSTN  180
NGSISRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4634125192Transcription factor HapC (Eurofung)
4g92_B3e-4634125192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891940.11e-139nuclear transcription factor Y subunit B-1
SwissprotO822485e-60NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2N9ECM24e-90A0A2N9ECM2_FAGSY; Uncharacterized protein
STRINGXP_010090782.14e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-62nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]