PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891908.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 591aa MW: 65037.2 Da PI: 8.5482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_015891908.1 95 FVCEICNKGFQRDQNLQLHRRGH 117 89*******************88 PP
2	zf-C2H2	15.4	5.5e-05	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_015891908.1 171 WKCDKCSKKYAVQSDWKAHQKTC 193 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.33E-8	94	117	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	94	117	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	95	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	136	166	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.1E-5	159	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.33E-8	166	192	No hit	No description
SMART	SM00355	94	171	191	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MSNITGDEGS FSSGNITGEE VHQEKQQQQQ QQQQHQQLQN HFHGSSLVPS DATNSNGSTS 60 QQPAPKKKRN LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP 120 WKLRQRATTE VRKRVYICPE PTCVHHNAAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY 180 AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEENNKVN QGLMSNMGSN 240 LQNQMPDLIP SMPITTTTTP NTSINANNSE FNNYDPKNPL KSLPQELVPM PFKSMNMTGG 300 MFSSSSGSLF GGPRGISSSS SSLQLSSNGS SGFNYLQDGK NGCQLAGSAH MSATALLQKA 360 AQMGATASNS TINSPMMQKS FVSSMAGPDH QIRQPYTTSP TTQQHNTSSY NEHYQTTQQH 420 DQSSMVGIND GGLIANPLLN KNQQQDISVQ LFDPNNNAAS SVVSDMGMFS QMFMGGTDHH 480 QNQGGFLKNM QDQEDTSCNS SLIQGRSNAT DRNPTGGASR FGGGDMMTVD FLGIGGSRSG 540 NLHDKQQVQQ QQQQQKLELE AMRQQRLPII SPFQHQLSHG ESGMEKTIWD V

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MSNITGDEGS FSSGNITGEE VHQEKQQQQQ QQQQHQQLQN HFHGSSLVPS DATNSNGSTS  60
QQPAPKKKRN LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP  120
WKLRQRATTE VRKRVYICPE PTCVHHNAAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY  180
AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEENNKVN QGLMSNMGSN  240
LQNQMPDLIP SMPITTTTTP NTSINANNSE FNNYDPKNPL KSLPQELVPM PFKSMNMTGG  300
MFSSSSGSLF GGPRGISSSS SSLQLSSNGS SGFNYLQDGK NGCQLAGSAH MSATALLQKA  360
AQMGATASNS TINSPMMQKS FVSSMAGPDH QIRQPYTTSP TTQQHNTSSY NEHYQTTQQH  420
DQSSMVGIND GGLIANPLLN KNQQQDISVQ LFDPNNNAAS SVVSDMGMFS QMFMGGTDHH  480
QNQGGFLKNM QDQEDTSCNS SLIQGRSNAT DRNPTGGASR FGGGDMMTVD FLGIGGSRSG  540
NLHDKQQVQQ QQQQQKLELE AMRQQRLPII SPFQHQLSHG ESGMEKTIWD V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	167	240	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-33	167	240	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891908.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891908.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-111	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A061DSA6	0.0	A0A061DSA6_THECC; Indeterminate(ID)-domain 2
STRING	EOX94991	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-98	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]