PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891832.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 374aa    MW: 40424.1 Da    PI: 8.0445
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.2e-31114172259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+ae+++++++tYeg+Hnh+
  XP_015891832.1 114 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEEKSILITTYEGNHNHP 172
                     8*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-3398174IPR003657WRKY domain
SuperFamilySSF1182908.76E-28106174IPR003657WRKY domain
PROSITE profilePS5081129.402108174IPR003657WRKY domain
SMARTSM007747.6E-37113173IPR003657WRKY domain
PfamPF031066.9E-27114172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSSHGKEFME PQDLDVKDPR VCDGKRLARC ETMEVMSKEM QHSTSHFDGG GGGGGLDQSS  60
QRWGSPESPK YKSDEANQKQ QQQQQQHQQQ PPDHLPFRKP RVSVRARSDA PLINDGCQWR  120
KYGQKMAKGN PCPRAYYRCT MAVGCPVRKQ VQRCAEEKSI LITTYEGNHN HPLPAAATAM  180
ANTTSAAASM LLSDSTTSMD HHHHHHNHNH HHHITLNKNS SSASTALSFF PSSCINNSIP  240
AYASSMPTLS ASAPFPTITL DLTHNHNPTH ELINRFPPLL SFPGPPRPLP LLGHPMYLKL  300
PAVVDTVTAA IASDPNFTAA LAAAISSTIS GANNDTNISL STASGNNNVI ASSTNGLPGS  360
PDQLPHSCAT FSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20104175878Probable WRKY transcription factor 4
2lex_A1e-20104175878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891832.10.0probable WRKY transcription factor 47
RefseqXP_024933428.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI73e-68WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A386IP510.0A0A386IP51_ZIZJJ; WRKY transcription factor 62
STRINGEOX954651e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-54WRKY family protein