PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891830.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 557aa    MW: 61327.7 Da    PI: 7.7128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30297355259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+ae+++++++tYeg+Hnh+
  XP_015891830.1 297 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEEKSILITTYEGNHNHP 355
                     8*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-33281357IPR003657WRKY domain
SuperFamilySSF1182901.44E-27289357IPR003657WRKY domain
PROSITE profilePS5081129.39291357IPR003657WRKY domain
SMARTSM007747.6E-37296356IPR003657WRKY domain
PfamPF031061.2E-26297355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MENQRRQFMT FLRSGDFLPS NNPDRLIIQN PIHHHHAKPS NIVNEMDLFP TTTSTCSNKE  60
DDPNRHHVLH TLTNPISHPP PPSALVNTGL DLLTLNSGFS TSERKDKYDQ KSDIQLTNTL  120
QVELERLQQE NRKLKSMLDQ ITKNYNLLQA QLLVAMQKQP ARCHTLLEQW VVEQKTEVSG  180
MSSHAKEFME PQDLDVKDPR VCDGKRLARC ETMEVMSKEM QHSTSHFDDG GGGGGGGGLD  240
QSSQCWGSPE SPKYKSGEAN QKQQQQQQQH QQQPPDHLPF RKPRVSVRAR SEAPLINDGC  300
QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAEE KSILITTYEG NHNHPLPAAA  360
TAMANTTSAA ASMLLSDSTT SMDHHHHHHN HNHHHHITLN KNSSSASTAL SFFPSSCINN  420
SIPAYASSMP TLSASAPFPT ITLDLTHNHN PTHELINRFP PLLSFPGPPR PLPLLGHPMY  480
LKLPAVVDTV TAAIASDPNF TAALAAAISS TISGANNDTN ISLSTASGNN NVIASSTNGL  540
PGSPDQLPHS CTTFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21287358878Probable WRKY transcription factor 4
2lex_A2e-21287358878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024933426.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A386IP510.0A0A386IP51_ZIZJJ; WRKY transcription factor 62
STRINGEOX954651e-137(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-65WRKY family protein