PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891809.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 1018aa    MW: 112964 Da    PI: 6.674
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.6e-41153230178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_015891809.1 153 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 230
                     6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.6E-34147215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.385151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-39152234IPR004333Transcription factor, SBP-box
PfamPF031108.9E-30154227IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.8E-5754900IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-6781898IPR020683Ankyrin repeat-containing domain
CDDcd002048.00E-5787898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MEARFGGHHF YGVSSGKRTL EWDLNDWKWD GDLFIATPLN QVPLDNSMGR QFLPLGSAGI  60
PVTGGSSNSS SSCSEEGGNV GTDKEKREHE KRRRVLEVED EDRLNQEGAG TLSLKLGGHG  120
HGYQVSEREG GNWEGASGKK TKLGGGATPN RAVCQVEDCG ADLSNAKDYH RRHKVCEMHS  180
KASRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTNP DTVVNGNSLN  240
DDQTSGYLLI SLLRILSNMH SNRSDHNTDQ DLLSHLLRSL ANQTSEHGGK SVAGLLQGRQ  300
NLLTDGTSVG HSEAVNYLTN GPQGHPRPVT QHHQAVSVSG VAQQGMHEHN ASAGNIQATC  360
SLKPNVLNKP PAYLEGRDTT AGQIKMNNFD LNDIYIDSDD GIENPERSPA PTNVGVSSLD  420
CLSWVQQGSH QSSPPQTSGN SDSASPQSPS SSSGEAQSRT DRIVFKLFGK EPNDFPLVLR  480
AQILDWLSHS PSDIESYIRP GCIFLTIYLR QTEAAWDDLC YNLSSSLSRL LDVSDDTFWR  540
TGWVYIRVQN QIAFIYNGHV IIDTSLALRS SNYSKILSVK PIAISASEKA QFSVRGINMA  600
RPATRLFCAL EGKYLVQEAT QDLMDSVDSV KEHDEQSINF SCSIPLVNGR GFVEIEDHGY  660
SSSFFPFIVA EEDVCSEIRV LESALEYAET DANLRGSGNI VTQNQAMDFI SEMGWLLHRS  720
QLRSRLGHLD PNADPFPLKR FKWLMEFSLD HDWCAVVRKL LDILLDGSVS EGEHPSLSLA  780
LLDMGLLHRA VRKNSRPLVE FLLRYVPKNI TRKLESEDNV TANGVNGNFL FRPDVTGPAG  840
LTPLHIAAGK DDSEDVLDAL TDDPKMVGIE AWKSALDSTG STPEDYARLR GHYSYIHLVQ  900
RKINKRPTTA EHVVVDMPNN VNDLIVNQKQ NNEFRSSSSS LDIGRSELKW NHQQQCRVCD  960
RKVGYGSRSR SLLYRPAMLS MVAIAAVCVC VALLFKSSPE VVYIFRPFRW ELLEYGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30144227184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1906656e-87KF190665.1 Frangula alnus subsp. alnus clone Contig10688 polymorphic genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891807.10.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2P5ETD20.0A0A2P5ETD2_TREOI; SBP-box transcription factor
STRINGXP_010091413.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]