PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015891674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | AP2 | ||||||||
Protein Properties | Length: 354aa MW: 39973.2 Da PI: 7.5686 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.2e-12 | 45 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ ++ Aa a++ a++k++g XP_015891674.1 45 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEQAAAHAYDLAALKYWG 101 78*******************99998898888888*****99*************98 PP | |||||||
2 | AP2 | 51.3 | 3e-16 | 144 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_015891674.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.7E-14 | 45 | 110 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-8 | 45 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.492 | 46 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-12 | 46 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-17 | 46 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.18E-24 | 144 | 205 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 144 | 205 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-12 | 144 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 145 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 145 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 145 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAKLSQQNRK SNNANNNTNT TANTAIKVKR TRRSVPRDSP PQRSSVYRGV TRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQG AYDDEQAAAH AYDLAALKYW GQDTILNFPL ATYEKELKEM 120 EGVAREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE 180 EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNGQDNEN SSFPSFINTT TTTSTDQPNL 240 TQNLNQELGL GFFQNQQQTS GSGETILAQP RPATATSALG LLLQSTKFKE MMEMTSAVDS 300 PVSPPESDPP QCTFPDDIQT YFDCQDSSSY GDHGDDIIFG ELNSLMPPMF QCDF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015891674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024924339.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-116 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | M5XNZ8 | 0.0 | M5XNZ8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27817 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-102 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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