PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891636.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 399aa    MW: 45063 Da    PI: 5.2214
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.6e-073172237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    ++r C+ +++  + l+C+ ++  lC +C +e H+       H
  XP_015891636.1 31 QKRLCDYCNDSTALLYCRADSAKLCFSCDQEVHSAnqlftkH 72
                    7899******99*********************655566666 PP
2zf-B_box26.71.2e-0875118341
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41 
                      + C+ +++ ++++fC + ++ lC++C  e H+      H+++p
  XP_015891636.1  75 SQLCDVCDDSPASIFCSTESCVLCQNCDWERHSIslspvHDRRP 118
                     578*****************************558888888877 PP
3CCT63.65.9e-22355398144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Re a++RYkeK+ktR++eK+irY+sRKa+AesR R+KGrF+k++
  XP_015891636.1 355 RETAISRYKEKKKTRRYEKHIRYQSRKARAESRIRIKGRFAKAD 398
                     99***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.0213077IPR000315B-box-type zinc finger
SMARTSM003361.2E-133077IPR000315B-box-type zinc finger
PfamPF006431.2E-53174IPR000315B-box-type zinc finger
CDDcd000211.89E-63365No hitNo description
PROSITE profilePS5011910.16873119IPR000315B-box-type zinc finger
PfamPF006433.5E-676118IPR000315B-box-type zinc finger
CDDcd000212.60E-577119No hitNo description
SMARTSM003360.3678119IPR000315B-box-type zinc finger
PROSITE profilePS5101714.872355397IPR010402CCT domain
PfamPF062039.4E-16355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MNGSPPRDIS YKEEEEEEEK KQQMDHSMTT QKRLCDYCND STALLYCRAD SAKLCFSCDQ  60
EVHSANQLFT KHARSQLCDV CDDSPASIFC STESCVLCQN CDWERHSISL SPVHDRRPLE  120
EFTGCPSLTE LLTIFGFEDV SKKALLLSEE SGVADGFVES GLDGSQDFVD GFSDLVLWNT  180
PSVVSLDDLV ASNSAHSFQA MGIPPLPKNR NAACGQHKAE VLNQLRKLAK MEPNLSYENV  240
TDFQPLVSEQ NLQPGSVCTG FEYDAEPNLF PRYEARQYQP CTGNGDTAVE EFNPETSLRS  300
FVQESHNDCD KHSDTSDTVY HISDGHIGNS QNHTGSKFLP DYLKVAPHEL RTQDRETAIS  360
RYKEKKKTRR YEKHIRYQSR KARAESRIRI KGRFAKADP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891636.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891636.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLM5VM631e-160M5VM63_PRUPE; Uncharacterized protein
STRINGEMJ022771e-161(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.16e-81B-box type zinc finger protein with CCT domain