PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891602.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 729aa    MW: 81459.8 Da    PI: 6.7114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.12.3e-25149249198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f k+ltpsd++++g +++pk++a+e+      ++++   ++l+  d++g +W +++i+r++++r++lt+GW+ Fv +++L +gD +vF   + ++
  XP_015891602.1 149 FSKKLTPSDTSTHGGFSVPKRYADEYlppldmSQQP-PLQELVAVDLHGLEWHFRHIFRGQPKRHLLTSGWSTFVTSKKLLAGDACVFV--RGEN 240
                     88*****************************64444.4469************************************************..4499 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +el+v+++r
  XP_015891602.1 241 GELRVGIRR 249
                     99*****97 PP
2Auxin_resp102.74.5e-34275357183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+st+++F+v+Y+P++s++e++++++k++k+ ++ + vGmRf+++fe+e+s+e+r +Gt+vg++d d +rW nS+Wr Lk
  XP_015891602.1 275 ACHAVSTGTMFTVYYRPWTSPAEYIIPFDKYMKSAQNDYFVGMRFRIRFEGEESAEKRSAGTIVGIEDRDCMRWANSEWRRLK 357
                     689*****************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-34143276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-39146262IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-24147249No hitNo description
PROSITE profilePS5086313.014149251IPR003340B3 DNA binding domain
SMARTSM010191.7E-23149251IPR003340B3 DNA binding domain
PfamPF023628.2E-23149249IPR003340B3 DNA binding domain
PfamPF065073.7E-31275357IPR010525Auxin response factor
PfamPF023092.1E-6623715IPR033389AUX/IAA domain
SuperFamilySSF542772.62E-8629708No hitNo description
PROSITE profilePS5174520.499631713IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MAGKQGMGLT TITTTCSSER SCTDGGGFPD TNNNNNQGEK DDLYTELWYA CAGPHVYVPR  60
PGEKVFYFPQ GHMEQVEAYA NQDGRTEMPI YNLPSKILCK VVYVQLKAEV HSDEVFAQIT  120
LLPLTEQDEQ SLEDETARQL PQRTGLRSFS KKLTPSDTST HGGFSVPKRY ADEYLPPLDM  180
SQQPPLQELV AVDLHGLEWH FRHIFRGQPK RHLLTSGWST FVTSKKLLAG DACVFVRGEN  240
GELRVGIRRC MATQNNTSAT VISGQSMQHG ILASACHAVS TGTMFTVYYR PWTSPAEYII  300
PFDKYMKSAQ NDYFVGMRFR IRFEGEESAE KRSAGTIVGI EDRDCMRWAN SEWRRLKVQW  360
DAATDAALLP ESLSPWSIKP MESTNTNNNF VIPQPKRARA HDLSSTDFSN LAGRGLLPNS  420
VEYTLQRCKE VLQGQEIGNV HAHEPAGAQN PSLLPNLIKD WNHTQFRMKN QLYLPMQNPF  480
YQCPHRAIAF PVENMVTSSL INHCHPTFTT YSACDNVTNS RSFSVSNVNS SNSGSQECTV  540
FEPKSKDETT IAQPNGCGRC MLFGVNLVNS SHPELPSPQV ATSSEHLSPC SIPPTSQSSV  600
SETIQVSETS KSISRVLSNK QCKKCCSVSN RSCTKVLKYG TVLGRSVDLS RFDGYDDLIS  660
ELDLMFDFNG SLKSGSNGWQ VSYIDNERDM MLLGDCQWEK FCSVVQRMFI CPKEEIDKLK  720
PSSSLPPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1434138317357Auxin response factor 1
4ldw_A1e-1434138317357Auxin response factor 1
4ldw_B1e-1434138317357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891602.10.0auxin response factor 24-like isoform X2
TrEMBLA0A0U2DB330.0A0A0U2DB33_PRUMU; Auxin response factor
TrEMBLA0A251N6C30.0A0A251N6C3_PRUPE; Auxin response factor
STRINGXP_008234982.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-158auxin response factor 2