PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891505.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 501aa    MW: 54916.2 Da    PI: 7.074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13355401455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_015891505.1 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 401
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4649234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18354423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-15354405No hitNo description
PfamPF000102.9E-10355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17355417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.423436501IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGGNFWVNEE DRVMVESVLG TEACQFLISL ASNNAMSDLV TPAGDLGVQQ GLGQLVEGSN  60
WNYAIFWQIV SSKSGGSALI WGDGHCKDPK SVGTAAGKIS GVDGSLEGVE KKKEVKKRVL  120
EKLHACFGGS DEDNYARRLH AVSDVEMFYL TCMYYMFQVD TPCGPGEAYK SGKSIWCSDM  180
SGCLHHYQSR SFLARVAGFQ TVVLVPVKGG VVELGSMKST PEDQKVVDMV RSTFGGAGSS  240
VNAKAFPMIF GRELSLGGTK SQSVNINFSP KVEDDSLASE PFELQAIGTS NGCRSNANEA  300
KLFPQLNQMM VGGFNAQAKV SSFELARDDS LPQLDERKPR KRGRKPANGR EEPLNHVEAE  360
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITYITDL QTKIRVMETE KQIGNNKQKP  420
LSVQDIDFQS RHEDAVVRTS CPLDSHPVSK VIKTFMEHQI VAQDSNVSMT EDDKVVHTFS  480
IQTHGADAQQ LKEKLAAALS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29349415269Transcription factor MYC2
5gnj_B1e-29349415269Transcription factor MYC2
5gnj_E1e-29349415269Transcription factor MYC2
5gnj_F1e-29349415269Transcription factor MYC2
5gnj_G1e-29349415269Transcription factor MYC2
5gnj_I1e-29349415269Transcription factor MYC2
5gnj_M1e-29349415269Transcription factor MYC2
5gnj_N1e-29349415269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336344RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891505.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891504.10.0transcription factor bHLH3
RefseqXP_015891505.10.0transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A314ZHC70.0A0A314ZHC7_PRUYE; BHLH transcription factor
STRINGXP_008235723.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-158bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]