PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891397.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 481aa MW: 52628.8 Da PI: 9.0388

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_015891397.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.2	0.00054	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_015891397.1 151 WKCEKCSKIYAVQSDWKAHSKTC 173 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.77E-6	74	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.6E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	280	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-4	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.77E-6	146	171	No hit	No description
SMART	SM00355	170	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MFPAAMSNST SLSEEASVSS GTRVQEFGGL NPVVSTISPQ QPHKIKKKRS LPGNPDPDAE 60 VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE IKKKAYVCPE 120 PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRKD SFITHRAFCD ALAEESARLS ANQLATTTNP VTIQPLFPFN PNPPQSITQI 240 SLTPWDPHQN PNPNSSNNNN SAQTQNHPLQ IKPEVQHFQI PNNPQFFQDG GHKGGLVTSP 300 YQNLHVTTQH ASNAATSAHL SATALLQKAA TVGATASTAA QQAQSVGHMA HGLAMTEFGT 360 LGHTIDTVSH HISTEFLGGL ASRDLATWQK TDRLTRDFLG LTGDGNGGHG PPHGTGNGAL 420 NVSVNVKDML TYSGSVDFHQ PYERNHHHHH HHHHHSLLKT QAFGFAAEAA AAAASDTWAD 480 C

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MFPAAMSNST SLSEEASVSS GTRVQEFGGL NPVVSTISPQ QPHKIKKKRS LPGNPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE IKKKAYVCPE  120
PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRKD SFITHRAFCD ALAEESARLS ANQLATTTNP VTIQPLFPFN PNPPQSITQI  240
SLTPWDPHQN PNPNSSNNNN SAQTQNHPLQ IKPEVQHFQI PNNPQFFQDG GHKGGLVTSP  300
YQNLHVTTQH ASNAATSAHL SATALLQKAA TVGATASTAA QQAQSVGHMA HGLAMTEFGT  360
LGHTIDTVSH HISTEFLGGL ASRDLATWQK TDRLTRDFLG LTGDGNGGHG PPHGTGNGAL  420
NVSVNVKDML TYSGSVDFHQ PYERNHHHHH HHHHHSLLKT QAFGFAAEAA AAAASDTWAD  480
C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	147	211	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	147	211	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891397.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891397.1	0.0	protein indeterminate-domain 12-like
Swissprot	O22759	1e-138	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2I4FDI0	0.0	A0A2I4FDI0_JUGRE; protein indeterminate-domain 12-like
STRING	XP_004290634.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-118	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]