PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891220.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 341aa MW: 36962.7 Da PI: 6.8374

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_015891220.1 128 FSCNFCKREFSTSQALGGHQNAH 150 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.49E-6	126	155	No hit	No description
PROSITE profile	PS50157	11.531	128	155	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	130	150	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEEIGGGETC PSEASSISAA SDGTTTPCQN HHAHNKKIMN NMKLKEKQLV KSSSDINDRV 60 ELQNPELSSG VLLDPNLCND ESLRGGSSSK LELNLFNSMN NQHVSSHANN NESLDQTTRE 120 KRSESGVFSC NFCKREFSTS QALGGHQNAH KQERALSKRR QGMDVGAFGH PPFPYYPYSS 180 ISSHPLFGSF DRSIGVRMES MIHKPNAYQW PTQAGYRFND HSGGGVSIGV GGVGWGRQAT 240 MNPQPSIDRL NLEGFQNNHI GGGGLGLAGT SASNNCSSSR FEESSAIRNL SVSTTTTTSN 300 NIVSGSDMVT NRLTGSDFIW RSEAMKTDHA DVTELDLSLK L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891220.1	0.0	uncharacterized protein LOC107425719
TrEMBL	A0A2N9IKW2	9e-85	A0A2N9IKW2_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-20	C2H2 family protein