PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015891218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 341aa MW: 36966.6 Da PI: 6.9053 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 128 | 150 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_015891218.1 128 FSCNFCKREFSTSQALGGHQNAH 150 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.49E-6 | 126 | 155 | No hit | No description |
PROSITE profile | PS50157 | 11.531 | 128 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 130 | 150 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEEIGGGETC PSEASSISAA SDGTTTPCQN HHAHNKKIMN NMKLKEKQLV KSSSNINDRV 60 ELQNSELSSG VLLDPNLCND ESLRGGSSSK LELNLFNSMN NQHVSSHANN NESLDQTTRE 120 KRSESGVFSC NFCKREFSTS QALGGHQNAH KQERALSKRR QGMDVGAFGY PPFPYYPYSS 180 ISSHPLFGSF NRSIGVRMES MIHKPNAYQW PTQDGYRFNN HSGGGVGTGV GGVGWGRQAI 240 MNPQPSIDRL NLDGFQNNNI GGGGLGLAGT SDSNNSSSSR FEESSAIRNL SVSTTTTSSN 300 NIVSGSDMVT NRLTGSDFIW RSEAMKTDHA DVTELDLSLK L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015891218.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891218.1 | 0.0 | uncharacterized protein LOC107425717 | ||||
TrEMBL | A0A2N9IKW2 | 5e-86 | A0A2N9IKW2_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-19 | C2H2 family protein |