PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015891214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 341aa MW: 37513.3 Da PI: 6.7901 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 128 | 150 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ + H++ H XP_015891214.1 128 FSCNFCKKEFSNSQAFGGHQNAH 150 89**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.31E-6 | 125 | 155 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 126 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.136 | 128 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 130 | 150 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEEIGGGETC SSEASSISAA SDGTTTPCQN QHAHNKKIMN NMKLKEKQLV KSSSDINDRV 60 ELQNPELSSR VLLDLNLCND ESLRGGSSSK LELNLFNSMN NQHVSSRANN DESLDETTRE 120 ERSESKVFSC NFCKKEFSNS QAFGGHQNAH KQERALWKRR QGMDVGAFGY PPFPYYPYSS 180 ISSYPLFGSF NRSIGVRNME SMIHKPNAYQ WPTQAGYRFN NHSGGGVGIG VDDVGWGRQA 240 IMNPQASIDR LNLEGFQNNH IGGGGLRLAG TSASNNSSSS RFEESSAIRN LSVSTSTTSN 300 NIVSGSDMVT NRLTGSDFIW RSEDMKTDHA DVPKLDLSLK L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015891214.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891214.1 | 0.0 | zinc finger protein 3-like | ||||
TrEMBL | A0A2N9IKW2 | 1e-82 | A0A2N9IKW2_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 6e-16 | C2H2 family protein |