PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015891192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 47727.9 Da PI: 7.2654 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162 | 2.3e-50 | 35 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ XP_015891192.1 35 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTEN 128 79***************************.89***************888889****************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_015891192.1 129 SRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 160 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-56 | 34 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.894 | 34 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-25 | 36 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAIPASASSS MSHNDSNTVN KHGDDHDEHE QDMVMPGFRF HPTEEELVEF YLRRKVEGKR 60 FNVELITFLD LYRYDPWELP AMAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA 120 DRMIRTENSR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERYQK AEISLCRVYK 180 RPGVEDHPSL PRSLPSRASS SSSRPGASSS QSSERKQHNT INTVMEKLQA FGGVQTQQID 240 VEKMSETDGS INSDVTTALG LSKHNATTAT AAYRALGLQA AEMEAEEGML LQHHHHHHNH 300 HHQQSSKHQI YPLVPLFTAV SSSVSSSNAT IDDLHRLVNY QQPTNDHHHQ QQQYYNEHQH 360 HHQTQQHYTP LPPPPEAQQQ LGLNTLPNSL PTAFSDRLWE WNPIPEGNRE YPNPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-56 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-56 | 25 | 181 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-56 | 36 | 181 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-56 | 36 | 181 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015891192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891192.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A0M5JHG9 | 0.0 | A0A0M5JHG9_MANES; NAC transcription factors 10 | ||||
TrEMBL | A0A2I4FS91 | 0.0 | A0A2I4FS91_JUGRE; NAC domain-containing protein 35 | ||||
STRING | cassava4.1_009166m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7203 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-108 | NAC domain containing protein 35 |