PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891174.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 276aa    MW: 31676.4 Da    PI: 9.665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-171964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+++G+ +W+ Ia+++  gR++k+c++rw++ 
   XP_015891174.1 19 RGHWRPAEDDKLRQLVERYGPQNWNFIAEHLD-GRSGKSCRLRWYNQ 64
                     899*****************************.************96 PP
2Myb_DNA-binding51.42.5e-1671115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+eE+e+l+ a+k +G++ W+ Ia+++  gRt++ +k++++ +
   XP_015891174.1  71 KKPFTEEEEEKLLSAHKIYGNK-WACIAKYFH-GRTDNAVKNHYHVV 115
                      689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9661469IPR017930Myb domain
SuperFamilySSF466895.62E-3017112IPR009057Homeodomain-like
SMARTSM007176.4E-151867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-272072IPR009057Homeodomain-like
CDDcd001676.55E-142263No hitNo description
PfamPF139211.1E-182282No hitNo description
SMARTSM007175.7E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129418.05170120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2073118IPR009057Homeodomain-like
CDDcd001671.02E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGKSVSNSST TDFGRNCYRG HWRPAEDDKL RQLVERYGPQ NWNFIAEHLD GRSGKSCRLR  60
WYNQLDPNIN KKPFTEEEEE KLLSAHKIYG NKWACIAKYF HGRTDNAVKN HYHVVMARRR  120
RERFTVYHPQ NPTSSSAQDD GPCIRRPGLG LLTFQSNNHP AIKMGIFGTL PALRSSTDST  180
WSLSDSLTTL ANDSRSTRLD HHHILNHGDQ GGRINFGRTS TPFEFLNTKS GKVCESYHHH  240
LETTAKDKFQ KWGIKLQEDQ QKEVAFIDFL GVGMIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32161194107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891174.10.0transcription factor MYB52-like
TrEMBLW9QM042e-88W9QM04_9ROSA; Transcription factor
STRINGXP_010090845.14e-89(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.15e-64myb domain protein 69