PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891094.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 479aa    MW: 52664.7 Da    PI: 4.6541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.83.1e-4771342129
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppG rFhPtd elv++yLk+k+ gkkl++ e+i+evdiyk+ PwdL+ k ++++++ +wyfF++r+kkya+g+r +r+t+ g+Wk+tg+d++v+ 
  XP_015891094.1   7 PPGWRFHPTDVELVKYYLKRKILGKKLHV-EAISEVDIYKYAPWDLRdKsCLRNGDLKWYFFCPREKKYASGSRMKRTTEFGFWKTTGNDRSVHY 100
                     89***************************.89**************85347788888************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +ge+vg  ktL+f++g+a+kge+t+Wvmheyrle
  XP_015891094.1 101 -EGEVVGKIKTLIFHRGQASKGERTNWVMHEYRLE 134
                     .999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-534156IPR003441NAC domain
PROSITE profilePS5100550.5466156IPR003441NAC domain
PfamPF023654.4E-247133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MKRTTPPPGW RFHPTDVELV KYYLKRKILG KKLHVEAISE VDIYKYAPWD LRDKSCLRNG  60
DLKWYFFCPR EKKYASGSRM KRTTEFGFWK TTGNDRSVHY EGEVVGKIKT LIFHRGQASK  120
GERTNWVMHE YRLEEKGLAD RGVVQDSYVL SMIFEKGGRG PRNGAQYGAP YKEEDWISDE  180
EDNCVVTGSS ANRSVLMLPS SHNNGAANGT HASGSKCFGY SSESCISDCI PPTCEVSQPV  240
PPACEVPQPV LNFVVAGSSA NLSVPMLPSG HDNGAANSTP ASGSKCFGSS SESCISNCIP  300
PTCDVPQPVL PTCEVPQPVS TVEAMLENFQ VPNDDDDILS LMDCISWDDI PEGNENDKNE  360
NPCNLNNVRD IGKTSNFDGN NDIFNDLGDL GIAGLSEDGC SFPGQHETIY TMEQMHARDD  420
FMELMDLDIP LNWSAEAGGL GTGYNTSNNP DQFCHQTSPC AAAGRALPSQ YTMLLGKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-39715618165NO APICAL MERISTEM PROTEIN
1ut4_B1e-39715618165NO APICAL MERISTEM PROTEIN
1ut7_A1e-39715618165NO APICAL MERISTEM PROTEIN
1ut7_B1e-39715618165NO APICAL MERISTEM PROTEIN
4dul_A1e-39715618165NAC domain-containing protein 19
4dul_B1e-39715618165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891094.10.0protein FEZ-like
SwissprotQ9FY828e-91NAC82_ARATH; NAC domain-containing protein 82
TrEMBLW9QLV41e-111W9QLV4_9ROSA; NAC domain-containing protein 78
STRINGXP_010090859.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.45e-93NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]