PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 26845.3 Da PI: 8.4463 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 39.9 | 8.7e-13 | 5 | 29 | 38 | 62 |
zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62 ryWt+GG+lrnvPvGgg+rk k+++ XP_015890959.1 5 RYWTQGGTLRNVPVGGGCRKGKRAK 29 9*******************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-6 | 5 | 27 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-8 | 5 | 27 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MPSLRYWTQG GTLRNVPVGG GCRKGKRAKT STSGQNSRSQ AQPEPPLPPQ QPSQQVQQNM 60 ANPPAIISSG SVMTTTPAMR TIEPGALPSQ YYPGSGYLSS LAAIHSLNQS QPFDQALDVG 120 TDQLAGNNSS NMSLLQGFSV SSFGSQQQQQ HQIQPSQTHF YQTAGNRDKS INESLYQSEE 180 NLIQTAAGRS TSSSSPHEWP HNFMNTSGAT TASSESALWT MGNTKATANT TSAGSSFNPN 240 QWPDLPGYGP PP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890959.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890959.1 | 0.0 | dof zinc finger protein DOF4.4-like isoform X2 | ||||
TrEMBL | A0A1U8KBV6 | 3e-55 | A0A1U8KBV6_GOSHI; dof zinc finger protein DOF1.2-like | ||||
STRING | Gorai.009G168400.1 | 1e-53 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-10 | Dof family protein |