PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | Dof | ||||||||
Protein Properties | Length: 311aa MW: 34226.5 Da PI: 8.3527 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.4e-38 | 28 | 88 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ XP_015890953.1 28 QQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 88 68999***************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 11 | 86 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.5E-33 | 30 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MQPEREEMNL EDRRLKPEPE NQQQHQQQQQ PQKCPRCESL NTKFCYYNNY SLSQPRYFCK 60 TCRRYWTQGG TLRNVPVGGG CRKGKRAKTS TSGQNSRSQA QPEPPLPPQQ PSQQVQQNMA 120 NPPAIISSGS VMTTTPAMRT IEPGALPSQY YPGSGYLSSL AAIHSLNQSQ PFDQALDVGT 180 DQLAGNNSSN MSLLQGFSVS SFGSQQQQQH QIQPSQTHFY QTAGNRDKSI NESLYQSEEN 240 LIQTAAGRST SSSSPHEWPH NFMNTSGATT ASSESALWTM GNTKATANTT SAGSSFNPNQ 300 WPDLPGYGPP P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890953.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890953.1 | 0.0 | dof zinc finger protein DOF4.4-like isoform X1 | ||||
TrEMBL | A0A1U8KBV6 | 2e-89 | A0A1U8KBV6_GOSHI; dof zinc finger protein DOF1.2-like | ||||
STRING | Gorai.009G168400.1 | 5e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-33 | OBF binding protein 4 |