PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890874.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27067.7 Da    PI: 6.5149
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvt+skRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  XP_015890874.1  9 KRIENNTNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                    79********************************************9997 PP
2K-box211.3e-08113181977
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                      ++a+ e+l+q+++ L+ e+++ ++++R +  + L   s+ eL+  e++L + l ++ +kK++ll  q+
  XP_015890874.1 113 ETNANLEELTQDIRSLQHELQMYEQQLRFFEPDPLLIHSIDELETCEKNLWNTLARVTKKKKDLLNHQL 181
                     688999***********************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.394161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002656.85E-37278No hitNo description
SuperFamilySSF554551.1E-29278IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT YSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVLARY INLPDNDRGV IRNKEFLLST LSTLKSESET IAFHQNQMAS PAETNANLEE  120
LTQDIRSLQH ELQMYEQQLR FFEPDPLLIH SIDELETCEK NLWNTLARVT KKKKDLLNHQ  180
LPTYDPSGVQ IYLEAQDGVP GPFENEVANW LPADNVQNPT QMCVGSESSC VHTTPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17170169MEF2 CHIMERA
6byy_B2e-17170169MEF2 CHIMERA
6byy_C2e-17170169MEF2 CHIMERA
6byy_D2e-17170169MEF2 CHIMERA
6bz1_A2e-17170169MEF2 CHIMERA
6bz1_B2e-17170169MEF2 CHIMERA
6bz1_C2e-17170169MEF2 CHIMERA
6bz1_D2e-17170169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890874.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890874.21e-176agamous-like MADS-box protein AGL104
SwissprotQ1PFC21e-69AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A061DIV81e-105A0A061DIV8_THECC; AGAMOUS-like 104, putative
STRINGEOX921921e-106(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.19e-65AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]