PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890842.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 678aa    MW: 75374.7 Da    PI: 6.3516
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_015890842.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 217
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_015890842.1 218 NGELRVGVRR 227
                     999*****97 PP
2Auxin_resp110.81.4e-36253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d +++ W nS+WrsLk
  XP_015890842.1 253 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEARSHKLSVGMRFKMRFEGEEAPERRFSGTIVGVGDNSSSGWANSEWRSLK 335
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-43118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-40123242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.73E-21125227No hitNo description
PROSITE profilePS5086311.279127229IPR003340B3 DNA binding domain
PfamPF023622.7E-20127227IPR003340B3 DNA binding domain
SMARTSM010191.0E-21127229IPR003340B3 DNA binding domain
PfamPF065072.9E-34253335IPR010525Auxin response factor
PfamPF023092.4E-12551644IPR033389AUX/IAA domain
PROSITE profilePS5174526.911554647IPR000270PB1 domain
SuperFamilySSF542774.56E-12556631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAFSATNHSS GGTHTGASAD ALYKELWHAC AGPLVTLPRE EERVYYFPQG HMEQLEASMH  60
QVLEQQMPSF NLPSKILCKV VHVQLRAEPE TDEVYAQITL LPEAEQSEVT SPDPPLPDPP  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QPSNMPSSVI  240
SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFLVSV NKYLEARSHK LSVGMRFKMR  300
FEGEEAPERR FSGTIVGVGD NSSSGWANSE WRSLKVQWDE PSSILRPERV SPWELEPLVT  360
ASPPSSQPTP RNKRARPSVL PSPSPDLSVL GVWKSPVESP SAFSYCDPQR GRELYTSPKF  420
SSVSKTNSLG FSGNSSLAAV SSNSMYWSNR VETVTESFSP AINKDSGERR QSTGNGCRLF  480
GIQLLENSNI EDTSPVVTVS GTVGDIRPVP SLEAESDQLF EPSNVNRADN PSVSCDAEKS  540
CLRSPQESQS RQIRSCTKVH MQGIAVGRAV DLTRFDHYED LLKKLEQMFD IEGELRGSAK  600
KWQVVYTDDE DDMMMVGDDP WHEFCNMVRK IFIYTTEEVK RLSPKIKLSV NEEVKPGKAD  660
SEGVVNNDDQ LSIVGSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033621359Auxin response factor 1
4ldw_A0.033621359Auxin response factor 1
4ldw_B0.033621359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890840.10.0auxin response factor 1-like
RefseqXP_015890841.10.0auxin response factor 1-like
RefseqXP_015890846.10.0auxin response factor 1-like
RefseqXP_024932438.10.0auxin response factor 1-like
RefseqXP_024932439.10.0auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2L1GGZ70.0A0A2L1GGZ7_9ROSA; Auxin response factor
STRINGEMJ263520.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]