PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890801.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 300aa    MW: 32254.4 Da    PI: 8.2616
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.51.4e-3275131259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     + vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e 
  XP_015890801.1  75 KVVRYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 131
                     679**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-2977129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2577132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3178129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27879128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.8E-31225295IPR009057Homeodomain-like
SuperFamilySSF466891.54E-19227294IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-27233289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELSSQEGEI PIPINSAFGG GGGGGGGHGH GHLIHHDPSP HNHIIPSSAP PQIVPSNGSS  60
MPTTSLDDHP TPYKKVVRYK ECLKNHAAAM GGNATDGCGE FMPSGEEGTI EALNCSACNC  120
HRNFHRKEIE GEPNPCDCHH SSSPHINRIG RKFILGHHKN MLPPEALGYP TATGTFIPSR  180
APPPHHMIMS YNMGSLPSES DEQEDGGVGG GGGGGGIGVV GGAVSTRGPH MVKKRFRTKF  240
TQEQKEKMLN FAEKVGWKIQ KQEESVVQQF CQEIGVKRRV LKVWMHNNKH NLAKKNPTSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-252342911875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4929602e-68FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890801.10.0zinc-finger homeodomain protein 4-like
SwissprotO647221e-77ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2I4EEG01e-149A0A2I4EEG0_JUGRE; zinc-finger homeodomain protein 4
STRINGVIT_12s0035g01880.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-77homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]