PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890730.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 330aa    MW: 36845.2 Da    PI: 6.2438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13131182155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  XP_015890730.1 131 QRMTHIAVERNRRRQMNDYLSVLRSMMPSS---YVQRGDQASIIGGAINFVKELE 182
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.30E-14129186No hitNo description
SuperFamilySSF474594.32E-17129204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-13130185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALETAIFQA DPFSSHGYKD FHTSLGGGGT WSHAAAAAYT GGLEKVDTDQ DLDMIWNCSP  60
NSSLPLQSFN NDPADTISSS AENFSGSNNN GYVVGGTVVS PVKSTVTTTI TGRRKRRRTR  120
SIKNKEDVEN QRMTHIAVER NRRRQMNDYL SVLRSMMPSS YVQRGDQASI IGGAINFVKE  180
LEQLLQFLET QKRNQQSDSN LSTLFSDFFT FPQYSTSTQF NNSLSSEPKT LMAEKQSTAA  240
IADVEVTMVE THASIKVLIK RHKKQLFKMV VGLHSLHLLI LHLNITTVDN MVLYSFSVQV  300
EDDSQLTSVN EISASVYEML ERIQEEAEYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRRR
2113118RKRRRT
3131142RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890731.10.0transcription factor bHLH94-like isoform X2
SwissprotQ9C7T42e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLW9S1T41e-117W9S1T4_9ROSA; Uncharacterized protein
STRINGXP_010106299.11e-118(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]