PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890706.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 556aa MW: 60204.1 Da PI: 8.5566

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_015890706.1 77 FICEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	12.6	0.00042	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_015890706.1 153 WKCDKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.37E-7	76	99	No hit	No description
SMART	SM00355	0.022	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	77	99	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.8E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.8E-4	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.37E-7	148	173	No hit	No description
SMART	SM00355	140	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MDENMSNLTS ASGEAASVSS GNRTEIGTNY PSQYFAPPPQ TQIQPPLKKK RNLPGNPDPD 60 AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIKKKVYVC 120 PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR RDSFITHRAF CDALAEESAR AISANPVLLS SQQQQQQHPG GASSTSHMNL 240 QIPQFNHPHH HQELHGFALK KENFSSLRPE IPPWLAFNNA GPPPPHLDIS SSSSIFSTTT 300 RLDQDLPNIH ETHHPNPNPS LGPTLPPYQP TPSPHMSATA LLQKAAQMGA TMSSKTTSTT 360 TATAAASSSS SPSTMIRAHH QLHVSSSADH DSGNNNSNGN FGLNLSSRDE MLLGTAGFAH 420 GLPAFGNNKA ATISSASPSV SASATTANTL PLPPPPPHPS LLHDMMNSLS SGTGFEGTCF 480 EDAFSGILSN SKKLDHKTNG GGDENGGSCG GDQGLTRDFL GLRALSHSDI MSFAGLGNCM 540 NTSREHENQT HKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MDENMSNLTS ASGEAASVSS GNRTEIGTNY PSQYFAPPPQ TQIQPPLKKK RNLPGNPDPD  60
AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIKKKVYVC  120
PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAEESAR AISANPVLLS SQQQQQQHPG GASSTSHMNL  240
QIPQFNHPHH HQELHGFALK KENFSSLRPE IPPWLAFNNA GPPPPHLDIS SSSSIFSTTT  300
RLDQDLPNIH ETHHPNPNPS LGPTLPPYQP TPSPHMSATA LLQKAAQMGA TMSSKTTSTT  360
TATAAASSSS SPSTMIRAHH QLHVSSSADH DSGNNNSNGN FGLNLSSRDE MLLGTAGFAH  420
GLPAFGNNKA ATISSASPSV SASATTANTL PLPPPPPHPS LLHDMMNSLS SGTGFEGTCF  480
EDAFSGILSN SKKLDHKTNG GGDENGGSCG GDQGLTRDFL GLRALSHSDI MSFAGLGNCM  540
NTSREHENQT HKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-35	149	210	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-35	149	210	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148918	1e-112	AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890704.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-128	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2I4H050	0.0	A0A2I4H050_JUGRE; protein indeterminate-domain 7-like isoform X1
STRING	cassava4.1_004983m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-117	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]