PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 556aa MW: 60204.1 Da PI: 8.5566 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_015890705.1 77 FICEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00042 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_015890705.1 153 WKCDKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 76 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.37E-7 | 76 | 99 | No hit | No description |
SMART | SM00355 | 0.022 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.8E-5 | 77 | 99 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 118 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 141 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.37E-7 | 148 | 173 | No hit | No description |
SMART | SM00355 | 140 | 153 | 173 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MDENMSNLTS ASGEAASVSS GNRTEIGTNY PSQYFAPPPQ TQIQPPLKKK RNLPGNPDPD 60 AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIKKKVYVC 120 PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR RDSFITHRAF CDALAEESAR AISANPVLLS SQQQQQQHPG GASSTSHMNL 240 QIPQFNHPHH HQELHGFALK KENFSSLRPE IPPWLAFNNA GPPPPHLDIS SSSSIFSTTT 300 RLDQDLPNIH ETHHPNPNPS LGPTLPPYQP TPSPHMSATA LLQKAAQMGA TMSSKTTSTT 360 TATAAASSSS SPSTMIRAHH QLHVSSSADH DSGNNNSNGN FGLNLSSRDE MLLGTAGFAH 420 GLPAFGNNKA ATISSASPSV SASATTANTL PLPPPPPHPS LLHDMMNSLS SGTGFEGTCF 480 EDAFSGILSN SKKLDHKTNG GGDENGGSCG GDQGLTRDFL GLRALSHSDI MSFAGLGNCM 540 NTSREHENQT HKPWQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 149 | 210 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 149 | 210 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890705.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148918 | 1e-112 | AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890704.1 | 0.0 | protein indeterminate-domain 7 isoform X1 | ||||
Swissprot | Q8H1F5 | 1e-128 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A2I4H050 | 0.0 | A0A2I4H050_JUGRE; protein indeterminate-domain 7-like isoform X1 | ||||
STRING | cassava4.1_004983m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-117 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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