PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890704.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 573aa MW: 62231.4 Da PI: 8.6567

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.6e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_015890704.1 94 FICEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	12.5	0.00043	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_015890704.1 170 WKCDKCSKRYAVQSDWKAHSKTC 192 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.1E-7	93	116	No hit	No description
SMART	SM00355	0.022	94	116	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.0E-5	94	116	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-4	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.1E-7	165	190	No hit	No description
SMART	SM00355	140	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MIKGLLFQQQ QQQQQQAMDE NMSNLTSASG EAASVSSGNR TEIGTNYPSQ YFAPPPQTQI 60 QPPLKKKRNL PGNPDPDAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRTSKEI KKKVYVCPET SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA 180 VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIS ANPVLLSSQQ 240 QQQQHPGGAS STSHMNLQIP QFNHPHHHQE LHGFALKKEN FSSLRPEIPP WLAFNNAGPP 300 PPHLDISSSS SIFSTTTRLD QDLPNIHETH HPNPNPSLGP TLPPYQPTPS PHMSATALLQ 360 KAAQMGATMS SKTTSTTTAT AAASSSSSPS TMIRAHHQLH VSSSADHDSG NNNSNGNFGL 420 NLSSRDEMLL GTAGFAHGLP AFGNNKAATI SSASPSVSAS ATTANTLPLP PPPPHPSLLH 480 DMMNSLSSGT GFEGTCFEDA FSGILSNSKK LDHKTNGGGD ENGGSCGGDQ GLTRDFLGLR 540 ALSHSDIMSF AGLGNCMNTS REHENQTHKP WQG

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MIKGLLFQQQ QQQQQQAMDE NMSNLTSASG EAASVSSGNR TEIGTNYPSQ YFAPPPQTQI  60
QPPLKKKRNL PGNPDPDAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRTSKEI KKKVYVCPET SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA  180
VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIS ANPVLLSSQQ  240
QQQQHPGGAS STSHMNLQIP QFNHPHHHQE LHGFALKKEN FSSLRPEIPP WLAFNNAGPP  300
PPHLDISSSS SIFSTTTRLD QDLPNIHETH HPNPNPSLGP TLPPYQPTPS PHMSATALLQ  360
KAAQMGATMS SKTTSTTTAT AAASSSSSPS TMIRAHHQLH VSSSADHDSG NNNSNGNFGL  420
NLSSRDEMLL GTAGFAHGLP AFGNNKAATI SSASPSVSAS ATTANTLPLP PPPPHPSLLH  480
DMMNSLSSGT GFEGTCFEDA FSGILSNSKK LDHKTNGGGD ENGGSCGGDQ GLTRDFLGLR  540
ALSHSDIMSF AGLGNCMNTS REHENQTHKP WQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-35	166	227	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-35	166	227	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890704.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148918	1e-112	AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890704.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-128	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2I4H050	0.0	A0A2I4H050_JUGRE; protein indeterminate-domain 7-like isoform X1
STRING	cassava4.1_004983m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-116	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]