PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890661.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HB-other

Protein Properties

Length: 1752aa MW: 197172 Da PI: 4.9466

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	34	89	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r++L++klgL++rq ++WF+ rR k+kk XP_015890661.1 34 PKRQMKTPFQLETLEKAYALETYPSESMRADLSEKLGLSDRQLQMWFCHRRLKDKK 89 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-18	14	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.17E-16	23	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	30	90	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	32	94	IPR001356	Homeobox domain
Pfam	PF00046	3.9E-16	34	89	IPR001356	Homeobox domain
CDD	cd00086	1.22E-13	35	90	No hit	No description
SMART	SM00571	3.2E-22	532	591	IPR018501	DDT domain
PROSITE profile	PS50827	16.469	532	591	IPR018501	DDT domain
Pfam	PF02791	2.9E-16	533	588	IPR018501	DDT domain
Pfam	PF05066	5.6E-15	714	782	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-8	923	963	IPR028942	WHIM1 domain
Pfam	PF15613	5.7E-13	1115	1187	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1752 aa Download sequence Send to blast
MEGGSEGEDH NIKNSENNNE SSKINNSNEG QSKPKRQMKT PFQLETLEKA YALETYPSES 60 MRADLSEKLG LSDRQLQMWF CHRRLKDKKE GGPPKKARKT VAALPESPID ELRAGHEPGS 120 DYGSGSGSGS SPFGHTELRN AVSRSVGDDM PMGRRYYESR QTIMELRAIA CVEAQLGEPL 180 RDDGPVLGIE FDPLPPDAFG APLVAEQQKR SGHHPFEGKS YERHDAKSNK ATTRVLYEYP 240 FLQDQSTSAV DVLPGRTSSF AVVNEQLSRA HVVQGQVSRV RLLSQQDKQG VAFPSPPRDD 300 DRVPQRDSFT NSRMISDHPI IVSDNPYGSD GQIIPSDTVL RMERKRKSEE ARLAKEVEAH 360 EIRLRKELEK QDNLRRKNEE RLRKEMEKQD RERRKEEERL MREKQREEER SRREQRREME 420 RREKFLQKES LRAEKRRQKE ELRKEREAVR RKAAIEKATA RRIARESMEL IEDEQLELME 480 IAAASKGLSS IISLDHDTLQ NLESFRDLLG QFPPMSVQLK RPLAIQPWIN SEENIGNLLM 540 IWRFLITFAD VLELWPFTLD EFIQGFHDYD SRLLGEIHVA LLKLIIKDIE DVARTPSSGL 600 GTNQNGAANP GGGHPQIVEG AYAWGFDIRN WQRHLNPLTW PEIFRQLALS AGFGPHLKKR 660 SVSWPCLPDN HEGKGCEDVI STLRSGSAAE NAFAIMQEKG LLLPRRSRHR LTPGTVKFAA 720 FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDAKLF ERIAPSTYRV 780 RAAYRKDPAD AEAILSAARK KVQIFENGFL AAEDADDVER DEDSECDDVD EDPEVDELAT 840 PSTANRDSDQ YNEVNTCLES GKENLCNDPL NLQNEFDKDS SSVPLIASKD VDCSSATTEQ 900 YVVGEDRNAS NPEEENMEID ESKSGESWTQ GLTEGEYSDL SVEERLNALV ALIGIANEGN 960 SIRLVLEDRL EAANALKKQM WGEAQLDKSR LKEENISKLD FPSSVGTKAE MHLASSVVEG 1020 SQSPLPDLDN RNIEASNRNS EASPSIAENQ KLVNVSHIIP NDLNSVPAEK TSVAPDFSMG 1080 PDNFLTQQQA FANKRSRSQL KSYIAHRAEE MYVYRSLPLG QDRRRNRYWQ FVASASSNDP 1140 GSGRIFVELH DGNWRLIDTE EAFETLLGSL DSRGIRESHL RLMLQKIEAS FKENVRRNVQ 1200 CLSTVGGNGT VVKNEVDEMN SSPDCHAAFD SPSSTLCGLN PDSIETSSSF RIELGKSETE 1260 KKAALRRYQD FQKWMFKECL NASTLYAMKC GKKRCAQLLE ICDGCLTTYY FEDSHCLSCH 1320 QTFGTMGNDF KFPQHVIQCK EKRKLELQDI HILDTALPLG NRLLKVLFAL IEVSVPLEAL 1380 QSSWMEDFRK NWGVKLNVSS SVEELLQIFT LFESVMKRDF LLSNFASTGE LLGSCSQPGA 1440 AAHDYSDPGS VTVLPWLPHT IAAVALRLFE LDASIIYVPH AKPEPVEAKE VKEYIKLPTR 1500 FAPSRNDKEI ELAELSHREH MKEENFAHLK SARNNYRRGK GGRDQRRGKK LQRRVNNSKS 1560 SAARKNARTN ENTTQGLRQL GRRPLGQGGA RGRRTIRKRR VENRAVEETL LGHIADTRSS 1620 PESGGESPRN LDEEWDDEKI NNINVKGDDV NSVEAVESDD NNAQAEEYEQ GNWELGYDGV 1680 SGGWNGDLME VSDEDVDASE DDDDDDDNGI EEVGDGDSEE DVDVSEESDG IPNRIENDEG 1740 SESAVSEDYS DD

Sequence ? help Back to Top

Protein Sequence Length: 1752 aa Download sequence Send to blast

MEGGSEGEDH NIKNSENNNE SSKINNSNEG QSKPKRQMKT PFQLETLEKA YALETYPSES  60
MRADLSEKLG LSDRQLQMWF CHRRLKDKKE GGPPKKARKT VAALPESPID ELRAGHEPGS  120
DYGSGSGSGS SPFGHTELRN AVSRSVGDDM PMGRRYYESR QTIMELRAIA CVEAQLGEPL  180
RDDGPVLGIE FDPLPPDAFG APLVAEQQKR SGHHPFEGKS YERHDAKSNK ATTRVLYEYP  240
FLQDQSTSAV DVLPGRTSSF AVVNEQLSRA HVVQGQVSRV RLLSQQDKQG VAFPSPPRDD  300
DRVPQRDSFT NSRMISDHPI IVSDNPYGSD GQIIPSDTVL RMERKRKSEE ARLAKEVEAH  360
EIRLRKELEK QDNLRRKNEE RLRKEMEKQD RERRKEEERL MREKQREEER SRREQRREME  420
RREKFLQKES LRAEKRRQKE ELRKEREAVR RKAAIEKATA RRIARESMEL IEDEQLELME  480
IAAASKGLSS IISLDHDTLQ NLESFRDLLG QFPPMSVQLK RPLAIQPWIN SEENIGNLLM  540
IWRFLITFAD VLELWPFTLD EFIQGFHDYD SRLLGEIHVA LLKLIIKDIE DVARTPSSGL  600
GTNQNGAANP GGGHPQIVEG AYAWGFDIRN WQRHLNPLTW PEIFRQLALS AGFGPHLKKR  660
SVSWPCLPDN HEGKGCEDVI STLRSGSAAE NAFAIMQEKG LLLPRRSRHR LTPGTVKFAA  720
FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDAKLF ERIAPSTYRV  780
RAAYRKDPAD AEAILSAARK KVQIFENGFL AAEDADDVER DEDSECDDVD EDPEVDELAT  840
PSTANRDSDQ YNEVNTCLES GKENLCNDPL NLQNEFDKDS SSVPLIASKD VDCSSATTEQ  900
YVVGEDRNAS NPEEENMEID ESKSGESWTQ GLTEGEYSDL SVEERLNALV ALIGIANEGN  960
SIRLVLEDRL EAANALKKQM WGEAQLDKSR LKEENISKLD FPSSVGTKAE MHLASSVVEG  1020
SQSPLPDLDN RNIEASNRNS EASPSIAENQ KLVNVSHIIP NDLNSVPAEK TSVAPDFSMG  1080
PDNFLTQQQA FANKRSRSQL KSYIAHRAEE MYVYRSLPLG QDRRRNRYWQ FVASASSNDP  1140
GSGRIFVELH DGNWRLIDTE EAFETLLGSL DSRGIRESHL RLMLQKIEAS FKENVRRNVQ  1200
CLSTVGGNGT VVKNEVDEMN SSPDCHAAFD SPSSTLCGLN PDSIETSSSF RIELGKSETE  1260
KKAALRRYQD FQKWMFKECL NASTLYAMKC GKKRCAQLLE ICDGCLTTYY FEDSHCLSCH  1320
QTFGTMGNDF KFPQHVIQCK EKRKLELQDI HILDTALPLG NRLLKVLFAL IEVSVPLEAL  1380
QSSWMEDFRK NWGVKLNVSS SVEELLQIFT LFESVMKRDF LLSNFASTGE LLGSCSQPGA  1440
AAHDYSDPGS VTVLPWLPHT IAAVALRLFE LDASIIYVPH AKPEPVEAKE VKEYIKLPTR  1500
FAPSRNDKEI ELAELSHREH MKEENFAHLK SARNNYRRGK GGRDQRRGKK LQRRVNNSKS  1560
SAARKNARTN ENTTQGLRQL GRRPLGQGGA RGRRTIRKRR VENRAVEETL LGHIADTRSS  1620
PESGGESPRN LDEEWDDEKI NNINVKGDDV NSVEAVESDD NNAQAEEYEQ GNWELGYDGV  1680
SGGWNGDLME VSDEDVDASE DDDDDDDNGI EEVGDGDSEE DVDVSEESDG IPNRIENDEG  1740
SESAVSEDYS DD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	89	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890661.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890653.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_024922307.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2P5CI27	0.0	A0A2P5CI27_TREOI; Octamer-binding transcription factor
STRING	XP_010111176.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1