PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NF-YC | ||||||||
Protein Properties | Length: 202aa MW: 22599.7 Da PI: 10.3012 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46 | 1.2e-14 | 93 | 184 | 8 | 99 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +++ +++d k +++P+ rik+i+++++ +is+ea l+ ka e f+ ++ s++ + + ++++l ++++v + ++dfl d vp++ XP_015890660.1 93 EEVAEKEDAKMNKFPMDRIKRIIRSEDSNLRISSEAIFLVNKATEKFLEKFCADSYVCCVQDRKKSLGYKHLSSIVCKRRKYDFLSDFVPEK 184 5678899**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.64E-16 | 100 | 183 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-14 | 105 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.8E-21 | 106 | 183 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MASSKKPVQE KKGNETKKKV TEGNSGKKGR NETNSSKTCN GTVSNSKIVP LQSSSSESQH 60 KVEDGPEITK TPTSSSKSRK GKGQQKVKRE REEEVAEKED AKMNKFPMDR IKRIIRSEDS 120 NLRISSEAIF LVNKATEKFL EKFCADSYVC CVQDRKKSLG YKHLSSIVCK RRKYDFLSDF 180 VPEKLKAEDA LAVAKLTKSE AG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 18 | KKPVQEKKGNETKKK |
2 | 154 | 172 | RKKSLGYKHLSSIVCKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890660.1 | 1e-145 | DNA polymerase epsilon subunit 4 | ||||
TrEMBL | A0A2P5DEY0 | 5e-71 | A0A2P5DEY0_PARAD; Transcription initiation factor | ||||
STRING | XP_008358413.1 | 9e-60 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-32 | nuclear factor Y, subunit C10 |