PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890628.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 350aa MW: 39152.2 Da PI: 5.1271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.9	2.2e-07	150	171	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_015890628.1 150 FCEICGKGFKRDANLRMHMRAH 171 6*******************99 PP
2	zf-C2H2	12.4	0.00049	236	259	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + XP_015890628.1 236 YSCNRCNkKSFSVLADLKSHLKHC 259 99*******************977 PP
3	zf-C2H2	12	0.00065	267	283	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg++Fsrk+ L H++ XP_015890628.1 267 TCGTTFSRKDKLFGHMS 283 6***************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.75E-6	146	172	No hit	No description
SMART	SM00355	0.0015	149	171	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.718	149	176	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-5	149	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2
SMART	SM00355	32	198	231	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	14	236	258	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	240	264	288	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MPYLGESPQL PPEYSSDTTG RDPIPSMDPR IPLQNLSEVR ASMDSLHGFL SNSVNLNAQL 60 SKDQMDMVSS EIASAIQQIV ASGTALIASY RVPDPPDRIP IPCVKIEEEE EETVVTKKDE 120 EEEEEVGDAA GDLEIVELDS VELLAEHIHF CEICGKGFKR DANLRMHMRA HGNRFKTREA 180 LTKPPEKIGS DPSSRIRFSC PYVGCNRNKG HKKFRALKSV VCVKNHFKRS HCPKMYSCNR 240 CNKKSFSVLA DLKSHLKHCG ETKWRCTCGT TFSRKDKLFG HMSLFEGHVP AVVDEDEKGK 300 SAVTAMEEDE NEVMAVKGGE LSANLEDDEE FFEGFDSIDG FCLENAFWSP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MPYLGESPQL PPEYSSDTTG RDPIPSMDPR IPLQNLSEVR ASMDSLHGFL SNSVNLNAQL  60
SKDQMDMVSS EIASAIQQIV ASGTALIASY RVPDPPDRIP IPCVKIEEEE EETVVTKKDE  120
EEEEEVGDAA GDLEIVELDS VELLAEHIHF CEICGKGFKR DANLRMHMRA HGNRFKTREA  180
LTKPPEKIGS DPSSRIRFSC PYVGCNRNKG HKKFRALKSV VCVKNHFKRS HCPKMYSCNR  240
CNKKSFSVLA DLKSHLKHCG ETKWRCTCGT TFSRKDKLFG HMSLFEGHVP AVVDEDEKGK  300
SAVTAMEEDE NEVMAVKGGE LSANLEDDEE FFEGFDSIDG FCLENAFWSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890628.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890628.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Refseq	XP_015890861.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBL	A0A251NSI5	1e-139	A0A251NSI5_PRUPE; Uncharacterized protein
STRING	XP_008234097.1	1e-138	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-77	C2H2 family protein