PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890587.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 268aa MW: 29727.3 Da PI: 8.6299

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	90	150	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ XP_015890587.1 90 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 150 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.3E-34	92	148	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-27	93	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MYILFHMGVL IFQPRQERLT SPPAICLFIP CFNDSFERER KMLGNCDEKM VVISSTNEWP 60 QNHIDDQKAL MAETAARTME KPGQEQLQQQ QQALKCPRCD SSNTKFCYYN NYSLSQPRHF 120 CKACKRYWTR GGTLRNVPVG GGCRKNKRVK RPASAIDGVS SSSSSSAPSS NLNQTSQPQI 180 DLSATSNHIS NLFYGLNNNP SDMSLPFPRF NTSGVSNVDT VSGYDLQPQL NSLGLGFSSG 240 IISNGVGGDS DYRNGFNPTK QIQDIVTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890587.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890587.1	0.0	dof zinc finger protein DOF1.4, partial
Refseq	XP_015890946.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A438C880	1e-109	A0A438C880_VITVI; Dof zinc finger protein DOF1.4
TrEMBL	F6HM25	1e-109	F6HM25_VITVI; Uncharacterized protein
STRING	VIT_10s0003g00040.t01	1e-110	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-37	Dof family protein