PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890577.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 398aa    MW: 44599.3 Da    PI: 7.3568
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-15232291155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_015890577.1 232 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 291
                     57*******************666664478446*************************98 PP
2AP227.38.9e-09334368138
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                     s y+GV++++++grW A+I  +     +k  +lg+fg 
  XP_015890577.1 334 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 368
                     57****************988532...5*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-12232291IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18232300IPR016177DNA-binding domain
CDDcd000189.08E-23232301No hitNo description
PROSITE profilePS5103219.44233299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-16233300IPR001471AP2/ERF domain
SMARTSM003804.0E-29233305IPR001471AP2/ERF domain
PRINTSPR003677.4E-6234245IPR001471AP2/ERF domain
PRINTSPR003677.4E-6281301IPR001471AP2/ERF domain
PfamPF008473.1E-4334368IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-6334370IPR016177DNA-binding domain
PROSITE profilePS510328.887335394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-4335367IPR001471AP2/ERF domain
SMARTSM003800.0014335396IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESTQFMAYD NSNTVSPQYL IDNFYANGWT NPKSQMYFPE  60
EDNNQGKECQ GPSNIAADSP IITSFIDPQT HNQAIPKLED FLGDSSSMVR YSDSQTETQD  120
SSLTQIYDQG SAYFNDQQQD LKAIAAFQTF SANSGSEVDD SVSIARTQQL TGGEFTTGHS  180
IDSSGAGNEL GFSSCPTGSL SLAVTQSSEK AIVSADSDCT KKIADTFGQR TSIYRGVTRH  240
RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTATTNFPV  300
TNYTKELEEM KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD  360
LYLGTFGKFR LLSYMFAAII FWLKGHYKHH LVWEQSSH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890577.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-160AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2P5EGR70.0A0A2P5EGR7_TREOI; AP2/ERF transcription factor
STRINGXP_010113448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-163AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]