PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890482.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SBP

Protein Properties

Length: 154aa MW: 17411.9 Da PI: 7.1387

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.1	4.6e-42	69	146	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C+adl++ak+yhrrhkvCe+h+kapvvlv+g++qrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk+++ XP_015890482.1 69 CCQADNCNADLTDAKHYHRRHKVCEFHAKAPVVLVAGHQQRFCQQCSRFHGLLEFDENKRSCRRRLAGHNERRRKSSS 146 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	1.8E-56	1	154	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	6.6E-35	63	131	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.659	67	144	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-39	68	148	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.3E-32	70	143	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MESSKAQGKR SFKYKMEEDE DQEEEEEEDE DSGSGLGFGE DNETKKRAMT TTSSSSKRGS 60 SAGGSTRPCC QADNCNADLT DAKHYHRRHK VCEFHAKAPV VLVAGHQQRF CQQCSRFHGL 120 LEFDENKRSC RRRLAGHNER RRKSSSDFQG EGSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-35	61	143	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890482.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890482.1	1e-109	squamosa promoter-binding protein 1
Swissprot	Q38741	3e-49	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A2P6Q483	3e-56	A0A2P6Q483_ROSCH; Squamosa promoter-binding-like protein
STRING	XP_008225122.1	9e-56	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	8e-40	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]