PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 25883.8 Da PI: 9.4766 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.7 | 1.3e-07 | 59 | 95 | 9 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r v s+ + g+ K A E+++LC++e ++++s+ g+ XP_015890413.1 59 RRVAVSRPQSGLSKNACEVCTLCAVETTLVVLSPGGQ 95 788999999************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-9 | 43 | 115 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.914 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-6 | 57 | 97 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MASAVSGRKW ICGRNEKSWF YISLTSIVIQ TVITWLPLIM AGMGSKKTQK KTTRGTDARR 60 VAVSRPQSGL SKNACEVCTL CAVETTLVVL SPGGQAFPSG HPCADSGTNR LYRHVKIDAE 120 IIRDFEVRQE AVLHKLSKEC AHLHYQIEAE KKRGEKLKQM QVENPVPYLL DAPIESLNRQ 180 ELYTLKAMVE EVKEKVVKRR NELVAQASTP SSAADCPGTD PVGGNSSAGP RGHLGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890413.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890412.1 | 1e-177 | agamous-like MADS-box protein AGL29 isoform X2 | ||||
Refseq | XP_015890413.1 | 1e-177 | agamous-like MADS-box protein AGL29 isoform X2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-17 | AGAMOUS-like 29 |