PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890409.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 619aa    MW: 66850.3 Da    PI: 7.6927
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.6e-24235279145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  XP_015890409.1 235 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 279
                     79****************************************985 PP
2QLQ57.24.9e-20165201137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+ +L++Q+l+yKy+++n+PvP++Ll +++k
  XP_015890409.1 165 GPFTPSQWIELEHQALIYKYISSNVPVPSNLLIPLKK 201
                     59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.4E-11165201IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.559166201IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-14166199IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287235279IPR014977WRC domain
PfamPF088798.0E-21236278IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDFGVVGLEG LMGPEGGDPS QITDSETKTK GLGSGFGKQE RSRPNEDDWR SSKMVKTEDL  60
SSASKTMPLH QGTTPLLRSN SLLPAGDTRQ QQQQQQQQEH MLSFSSHKPV VSFLTKEVGP  120
LDRNTQTSAF PYYQRTPSAA YSRNAVYGSG SLNANMHGPF TGVRGPFTPS QWIELEHQAL  180
IYKYISSNVP VPSNLLIPLK KSIYPYGLSG SSAGSLPPNS LGWGSFHLGF SGNTDPEPGR  240
CRRTDGKKWR CSRDAVADQK YCERHINRGR HRSRKPVEGQ SGHAASGTTT SKVVPMTSSM  300
STSVIPSGGA SDSLTITPHQ LKNLQSGAGA SSSAAAAVAT NPSTDALVNR MQDLRGLSMM  360
SSPTIKLKAN VSTFNIPKQE LMLEESSQSE FGLVSTDSLL NPSHKSSYLN SKNYGSFLDF  420
SDQETQDQHP LRQFMDEWPK DQSNHSVISW PEEIKSDWTQ LSMSIPMTSS EFSSSSSSPT  480
QEKLALSPLR LSREFEPMQM NLGQSNELGE ATHKQTNWVP ISWGTSMGGP LGEVLTSSTT  540
TVKPCKNSSA LNLLTEGWEG SPQLGSSPTG VLQKSTFCSL SNSSSGSSPR ADNKKNLDGA  600
SLYDDVLGST LASSSIPSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890409.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890409.10.0growth-regulating factor 1 isoform X2
SwissprotO810011e-138GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A2P5FSC70.0A0A2P5FSC7_TREOI; Growth-regulating factor
STRINGEMJ092290.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-110growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]