PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890379.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 202aa    MW: 22962.7 Da    PI: 9.7124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-122672455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  +++Y+k+Lq
  XP_015890379.1 26 EHIIAERKRREKLSQRFIALSGIVPGL-----KKMDKASVLGDTIKYVKQLQ 72
                    699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2692271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-102572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-172685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-172684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-102776No hitNo description
SMARTSM003533.6E-132877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVFRIAIQQG TKRSYSMSRT PSHAQEHIIA ERKRREKLSQ RFIALSGIVP GLKKMDKASV  60
LGDTIKYVKQ LQERVKVLEE QTKKRTVESV VFVKKSQFSG DDDSSSCDEN FDGRSDEALP  120
EIEVKVSEKD VLIRIHCEKQ RGVTVKILSE IEKLQLSVVN SSILPFGNST LDITIVAQMD  180
DEFSMTVKDL VKILRMALLK FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-142775957Transcription factor MYC2
5gnj_B3e-142775957Transcription factor MYC2
5gnj_E3e-142775957Transcription factor MYC2
5gnj_F3e-142775957Transcription factor MYC2
5gnj_G3e-142775957Transcription factor MYC2
5gnj_I3e-142775957Transcription factor MYC2
5gnj_M3e-142775957Transcription factor MYC2
5gnj_N3e-142775957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035ERKRRE
23136RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890379.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890379.11e-144transcription factor bHLH25-like
SwissprotQ9T0723e-72BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A314YN971e-113A0A314YN97_PRUYE; Transcription factor bHLH18
STRINGXP_008236876.11e-112(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-74bHLH family protein