PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890374.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 661aa    MW: 73317.7 Da    PI: 6.6661
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16320379155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_015890374.1 320 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 379
                     78*******************988886678446*************************98 PP
2AP250.93.8e-16422473155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_015890374.1 422 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 473
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-16320389IPR016177DNA-binding domain
PfamPF008476.5E-13320379IPR001471AP2/ERF domain
CDDcd000186.85E-22320387No hitNo description
PROSITE profilePS5103219.203321387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-16321388IPR001471AP2/ERF domain
SMARTSM003802.6E-29321393IPR001471AP2/ERF domain
PRINTSPR003675.1E-6322333IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17422482IPR016177DNA-binding domain
PfamPF008474.8E-11422473IPR001471AP2/ERF domain
CDDcd000183.26E-25422483No hitNo description
Gene3DG3DSA:3.30.730.102.1E-17423481IPR001471AP2/ERF domain
SMARTSM003806.1E-33423487IPR001471AP2/ERF domain
PROSITE profilePS5103218.834423481IPR001471AP2/ERF domain
PRINTSPR003675.1E-6463483IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKSMNNDDGN NNNWLGFSLS PNMKMEVSSD PHHHHQHQTH SSSSSSTSSA AVSHCVPTDF  60
FHSSPYGIYY GGVEGENGGF YSPLSVMPLK SDGSLCIMEA LSRSQPQAMV TTSTPKLEDF  120
FGGATMGTHH YESNDREAMA LSLDSIFYHQ NPENEPNDHN LLNQLQQNHP RHQQDQPHGQ  180
IENQHYSYYS ALRSQDLMLD NSKETHIADC NLQLPPMTDD GVSDMKSWVS RNYSANQVGC  240
MGDNGGESGS VGGMAYGDLQ SLSLSMSPGS QSSCVTGSQQ ISSTVTDCVA MDTKKRGPEK  300
VDHKQIVHRK SLDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY  360
DMEEKAARAY DLAALKYWGP STHINFPLEN YQKELEEMKN MTRQEYVAHL RRKSSGFSRG  420
ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFGTQEEA AEAYDIAAIK FRGLNAVTNF  480
DITRYDVDRI MTSNTLPAGE LAKRNKETTS GSEASDHNAG TNSSINEETK NNNEGGSDWK  540
MALYQSTQHL DEKPLCMETY KSQAYSVAPD NLIHHQEIED SAKMGAHLSN ASSLVTSLSS  600
SREGSPDKSS LPTLFGMPPS VSKFFSSSSP TNAVNSWIPS AQPRPTISLP HMPIFAAWTD  660
T
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890374.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868187.10.0AP2-like ethylene-responsive transcription factor ANT
RefseqXP_015890374.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-147CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2P5AUX30.0A0A2P5AUX3_PARAD; AP2/ERF transcription factor
TrEMBLA0A2P5F3130.0A0A2P5F313_TREOI; AP2/ERF transcription factor
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]