PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890208.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 720aa    MW: 80407.3 Da    PI: 6.5505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.63.5e-811825202345
            GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                     +e L+++A++++s++l+l++ +L+rl+++  +sp g+     ++R+a yf+eAL++ l++   +  +   ++ +++++ +++++a+++fs++sPi
  XP_015890208.1 182 IEDLIRAADCFDSDNLQLVHVILERLNQRlrSSPVGKpvgkGLRRAALYFKEALQSLLLN---GSNRMTMTRMSNWSEIVQTIKAYRAFSNMSPI 273
                     678*************************9988888774444789***************9...444444667777778***************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     + fsh+t+Nqa+lea++g++ +HiiDfdi+ G+Q ++++++La+++     +pp lRiT+v+++e    +e + + e+L++fA+el+++f+++++
  XP_015890208.1 274 PMFSHFTTNQALLEALNGSNFIHIIDFDIGLGGQHASFMKELAEKAvalrVNPPVLRITAVVAEE--YVTESRLITENLTQFAQELKIRFQIEFV 366
                     *********************************************9888888***********66..999999********************** PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak 274
                       +++e+l+l+++++  gE++aV l+  + r ld +  ++     +L  +++lsP vvv+v++e   + +++sF + f+++le+ys++++sl+++
  XP_015890208.1 367 SIHSFEMLSLKAIKFIDGEKTAVLLSPCILRRLDPTNRTAG----FLADIRRLSPVVVVFVDSEglGEAGAASFRRNFVSSLEFYSMMLESLDSS 457
                     999*****************************966655555....*******************76677************************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                     + +  +   k+E +ll+++i+ +v  +g++          Wre ++ +G++pv+lse+a+ qaklll+k++
  XP_015890208.1 458 M-SGGDFVPKIETFLLKPKIQLAVESAGRR-------GPAWREVFRGVGMRPVQLSEFAVFQAKLLLAKIQ 520
                     7.45577889**************999997.......899***************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.183155529IPR005202Transcription factor GRAS
PfamPF035141.2E-78182520IPR005202Transcription factor GRAS
PfamPF031341.3E-25564640IPR004345TB2/DP1/HVA22-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MRVPVNPPHT NQSSNPKSEP CNNSNTNSHS RNIGLHSPSM CYEPTSVLDL RRSPSPVAGK  60
PTKVSAISDV LSHQPNDPLE LDELQALHNF DWDSVMKDLG LPDESVPVLK TVTPPFNSSE  120
PQIPHLPMFP QPQPFDPTQL VQSDFNLSEL YSDHNLAQNL NSFDLAVDIH HGGNWNVGFD  180
FIEDLIRAAD CFDSDNLQLV HVILERLNQR LRSSPVGKPV GKGLRRAALY FKEALQSLLL  240
NGSNRMTMTR MSNWSEIVQT IKAYRAFSNM SPIPMFSHFT TNQALLEALN GSNFIHIIDF  300
DIGLGGQHAS FMKELAEKAV ALRVNPPVLR ITAVVAEEYV TESRLITENL TQFAQELKIR  360
FQIEFVSIHS FEMLSLKAIK FIDGEKTAVL LSPCILRRLD PTNRTAGFLA DIRRLSPVVV  420
VFVDSEGLGE AGAASFRRNF VSSLEFYSMM LESLDSSMSG GDFVPKIETF LLKPKIQLAV  480
ESAGRRGPAW REVFRGVGMR PVQLSEFAVF QAKLLLAKIQ CLEIGMALLG SNIAGEVGLR  540
LLLCPLGSNI VVRTACCSVG IVLPVYSTCK AIERKDHDDQ QKWLLYWAAY GSFSLVEVFS  600
DKFISWFPLY YHLKFAFLVW LQLPSVDGAK QLYISHLRPF FLRHQARIDH VLGIAYGEMA  660
KLISAHQTEI QYARAVIVKI MGSAELMLKG GDKPDQTQQH RAIEGQTRTS VIESDDGDDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2418751725347Protein SCARECROW
5b3h_A1e-2418751724346Protein SCARECROW
5b3h_D1e-2418751724346Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890208.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932365.10.0scarecrow-like protein 15
SwissprotO232101e-134SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A498KJF00.0A0A498KJF0_MALDO; Uncharacterized protein
STRINGEOX911560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-127GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]