PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | Dof | ||||||||
Protein Properties | Length: 348aa MW: 36561.6 Da PI: 8.6928 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.4e-39 | 66 | 124 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ XP_015890106.1 66 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNI 124 57899***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.2E-33 | 68 | 123 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-25 | 69 | 120 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 69 | 123 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 71 | 107 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MIQELLGGAG LIAGERKISI HGGRVLEATP PLSHSPSHSS SSSSSSTTTT TATTATTSSA 60 ATTSNSENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK 120 NKNISVSASV AAKTSAGKMK MVASDIGVRS GFCGGGGFDH ELPASPILWG SPQNSHLLTL 180 LRSTQNPNPS SLCNSMAVKE ESGMIGSHMM TEQAVVASGS MNGRSCSLGL DPVLGQVPSL 240 GLCSSFWRSN QNHQPPTHQQ NGFVVGEVQS NGIQELYQRL RSSANYYGDH SAVVLTNVGS 300 SSSSSSSSSA STMTTSILES APVSGGELGY WNPAFSWSDL PTTNGAYP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890106.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 3e-40 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024924337.1 | 0.0 | dof zinc finger protein DOF1.1-like | ||||
Refseq | XP_024932646.1 | 0.0 | dof zinc finger protein DOF1.1-like | ||||
TrEMBL | A0A2I4F418 | 1e-136 | A0A2I4F418_JUGRE; dof zinc finger protein DOF5.3-like | ||||
STRING | POPTR_0007s11620.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7219 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 4e-33 | Dof family protein |