PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890063.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 512aa    MW: 55119.8 Da    PI: 7.4939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-11138162226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  XP_015890063.1 138 GEKDCAHYMLTRTCKFGDSCKFDHP 162
                     7889********************8 PP
2zf-CCCH30.85.1e-10191215327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C++f +t  Ck+G rCkF+H++
  XP_015890063.1 191 APDCPYFIKTQRCKFGLRCKFNHPK 215
                     589********************96 PP
3zf-CCCH36.48.6e-12237262227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C f+++tG Ck+G++CkF+H++
  XP_015890063.1 237 FEPPCAFYLKTGNCKFGATCKFHHPK 262
                     789*********************96 PP
4zf-CCCH38.42.1e-12313338126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_015890063.1 313 PGEPDCPFYLKTGSCKYGATCRYNHP 338
                     5789*********************9 PP
5zf-CCCH39.41e-12397420326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+++++tG+Ck+G+rCk++H+
  XP_015890063.1 397 QIECDYYMKTGECKFGERCKYHHP 420
                     568********************8 PP
6zf-CCCH42.79.5e-14454476527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG++CkF H+p
  XP_015890063.1 454 ICPYYMKTGTCKYGATCKFDHPP 476
                     7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507136164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5137163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4142161IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4188215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136188216IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6191215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4194216IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131235263IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9237262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5240263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5240261IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892312340IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10314338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4318337IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6394421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309394422IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6396423IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10398420IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5400420IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8449476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201449477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6452476IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-11454476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6454474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MASHLYGYGG AASGAASGAV GATATGGVGL SSVYSEAALR YLAASSSDSD SSKYSLADHH  60
RMYLTHTTAD ALASYSSAAD SLLSGVKRSA AEVLYHQTLL GVHNTIGQSE AWYSTNSLAK  120
RSRYESASNL PIYPQRPGEK DCAHYMLTRT CKFGDSCKFD HPIWVPEGGI PDWKEVPLVA  180
TSESLPERPG APDCPYFIKT QRCKFGLRCK FNHPKDKLTT AGSLENVDVA VLPERPFEPP  240
CAFYLKTGNC KFGATCKFHH PKDVQILSNG QENGTSRHTE VALNTEGTFG AVHNSAAFTP  300
ALFYNSKELP IRPGEPDCPF YLKTGSCKYG ATCRYNHPDR NAIHPPAAIG HTIIASPAAS  360
LNIGAVNPVA SLYQTIDPRL AQPTVGVATI YPQRPGQIEC DYYMKTGECK FGERCKYHHP  420
IDRSAPTLST ASQVQQETTK LTLAGLPRRE GSIICPYYMK TGTCKYGATC KFDHPPPGEA  480
MAMATSQGTS TAAGGEANEE EKGSESIQEQ AQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818003e-90LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132553e-90LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890063.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2R6PQD60.0A0A2R6PQD6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)