PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889978.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 398aa    MW: 43877.7 Da    PI: 8.6663
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.6e-32142198360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      vrY+eClkNhAa++Ggh++DGCgEfmps g+eg+++++kCaAC+CHRnFHR+e + e
  XP_015889978.1 142 LVRYRECLKNHAATTGGHVLDGCGEFMPS-GDEGSSDSFKCAACECHRNFHRKEIDGE 198
                     589*************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-29143195IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-20143196IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-29144195IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.698145194IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.4E-30325396IPR009057Homeodomain-like
SuperFamilySSF466892.59E-19326395IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-28334391IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MELRGQDKEI GMPSTVGYNS PNIESSSSKL NSSSSLGLGE RIRDQIGHGT SIFSPPHHET  60
LDQHHTTLSF QSHFQPLNIP QQHQQKSRKD HQDHQNPDPV PAPISTSSAT TIITASGSNF  120
KTPPPPQPTP PPSTAAAVAA SLVRYRECLK NHAATTGGHV LDGCGEFMPS GDEGSSDSFK  180
CAACECHRNF HRKEIDGESQ YLPNASYYSY NPNKDINGRR SSIAATLPPH PQIPSPPHHH  240
HHYQHQLHQQ QQQRVRHYQF SSHGLLTSPS AAAAAGGSLM APMMMTFGGG GGGWTAAESS  300
SEDLNMFESN YGVGGQAGCS AVVQHHHNQA SASKKRFRTK FSQPQKEKMM EFAEKLGWRI  360
QKHDEQDVQQ FCSEVGVKRK VFKVWMHNNK QTMKKKEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-233333921675ZF-HD homeobox family protein
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889978.10.0zinc-finger homeodomain protein 5
TrEMBLA0A2N9EPR91e-105A0A2N9EPR9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.19e-31homeobox protein 24