PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 37219.7 Da PI: 6.3727 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 39 | 87 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a++ ++g XP_015889938.1 39 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARTMRG 87 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.3E-35 | 38 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.666 | 38 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-29 | 38 | 94 | No hit | No description |
PRINTS | PR00367 | 4.8E-8 | 39 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-29 | 39 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 39 | 96 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-11 | 41 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEFNTSKPDS SSPSSSSSKS KKKQQQQQQQ QQQDTTVRFL GVRRRPWGRY AAEIRDPSTK 60 ERHWLGTFDT AEEAALAYDR AARTMRGSKA RTNFVYSDMP HGSSVTSIIS PDEAAREMSH 120 LFSAPPPPQL PPQVPSQLPH SHSHSHSHSS SQLMFSQDPF DAFLFGGGGG RWPVHDQDEG 180 SVAAGSAHQF HLPITTINGS HSHSHSQQMQ MLMADETELP PLPPCVSTAC YAGSESDHHG 240 LIMDDSHINM NMNMNMNLGR QVWNNDTTST TTSLYGFPHT TTTTTTATTN GLVESQLSRP 300 YLGFDSKDNV HQSPLFSDTG FDAYEFDLGS SSSAYFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 39 | 94 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889938.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889938.1 | 0.0 | uncharacterized protein LOC107424606 | ||||
Refseq | XP_015898225.1 | 0.0 | uncharacterized protein LOC107431750 | ||||
TrEMBL | A0A2I4FBX8 | 1e-73 | A0A2I4FBX8_JUGRE; ethylene-responsive transcription factor LEP-like | ||||
STRING | XP_008390226.1 | 4e-76 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 2e-33 | ERF family protein |