PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | AP2 | ||||||||
Protein Properties | Length: 206aa MW: 22062.6 Da PI: 5.1331 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.6 | 2.6e-07 | 181 | 201 | 1 | 21 |
AP2 1 sgykGVrwdkkrgrWvAeIrd 21 s+y+GV++++++grW+++I+ XP_015889860.1 181 SQYRGVTFYRRTGRWESHIWL 201 78*****************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MWDLNDSPDQ RRDEESEEGC SSQKTSIDGD DEKGKRVGSV SNSSSSAVVI EDGSDEEEDG 60 GRVGGGGRIK KRGSNSNNST NNNNNNSSSS GKIFGFSVTH DDSMDSDPPP VTRQFFPVDD 120 SEMGTASGGG GAVSGGGGSF PRAHWVGVKF CQSDPLGTGK SSVEVSQPMK KSRRGPRSRS 180 SQYRGVTFYR RTGRWESHIW LEVDLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 66 | GGRVGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF265575 | 4e-66 | KF265575.1 Ziziphus jujuba microsatellite SSR75 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889860.1 | 1e-146 | floral homeotic protein APETALA 2-like | ||||
Swissprot | P47927 | 5e-35 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A1L6CB94 | 1e-64 | A0A1L6CB94_VERFO; AP2/ERF domain-containing transcription factor | ||||
TrEMBL | A0A2P5B2H3 | 2e-64 | A0A2P5B2H3_PARAD; AP2/ERF transcription factor | ||||
STRING | cassava4.1_005852m | 1e-62 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-22 | AP2 family protein |