PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | AP2 | ||||||||
Protein Properties | Length: 293aa MW: 32594.1 Da PI: 9.3018 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.9 | 2.9e-14 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_015889858.1 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 75 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-10 | 25 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-17 | 25 | 85 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.08E-26 | 25 | 85 | No hit | No description |
SMART | SM00380 | 4.2E-31 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-17 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEI 60 EAARAYDKAA IKCNGKEAVT NFDPSIYENE LNTTTEPSSN AADHNLDLSL GNSSSKQNNN 120 VSNPIGIINH TQNTAMGQQS GSMPFETDWR NQQGYRPKVN LQREQCGGDG DGVRRDGYME 180 SETMQLLSRT HIQSPAAVIE MHRYGGQFRR PGETLMPRTF QAQPNYHIQL PSSSNGGRIG 240 SDLSLSVNDQ QQWQSGSSQI FATAAASSGF PPQIRTTPNW LQKNGFHSLA RPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889858.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229659 | 8e-93 | KP229659.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF36) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889858.1 | 0.0 | ethylene-responsive transcription factor SHINE 3 isoform X2 | ||||
TrEMBL | A0A438FKK4 | 1e-139 | A0A438FKK4_VITVI; Floral homeotic protein APETALA 2 | ||||
TrEMBL | C1KBJ2 | 1e-139 | C1KBJ2_VITVI; Transcription factor APETALA2 | ||||
STRING | VIT_07s0031g00220.t01 | 1e-135 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 2e-64 | AP2 family protein |