PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889857.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 294aa    MW: 32693.2 Da    PI: 9.3018
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.9e-142575155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  XP_015889857.1 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 75
                    89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-172585IPR016177DNA-binding domain
PfamPF008476.2E-102575IPR001471AP2/ERF domain
CDDcd000184.69E-262585No hitNo description
Gene3DG3DSA:3.30.730.108.9E-172683IPR001471AP2/ERF domain
SMARTSM003804.2E-312689IPR001471AP2/ERF domain
PROSITE profilePS5103215.4612683IPR001471AP2/ERF domain
PRINTSPR003671.9E-62738IPR001471AP2/ERF domain
PRINTSPR003671.9E-66585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEI  60
EAARAYDKAA IKCNGKEAVT NFDPSIYENE LNTTTVEPSS NAADHNLDLS LGNSSSKQNN  120
NVSNPIGIIN HTQNTAMGQQ SGSMPFETDW RNQQGYRPKV NLQREQCGGD GDGVRRDGYM  180
ESETMQLLSR THIQSPAAVI EMHRYGGQFR RPGETLMPRT FQAQPNYHIQ LPSSSNGGRI  240
GSDLSLSVND QQQWQSGSSQ IFATAAASSG FPPQIRTTPN WLQKNGFHSL ARPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296598e-93KP229659.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF36) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889857.10.0ethylene-responsive transcription factor SHINE 3 isoform X1
TrEMBLA0A438FKK41e-139A0A438FKK4_VITVI; Floral homeotic protein APETALA 2
TrEMBLC1KBJ21e-139C1KBJ2_VITVI; Transcription factor APETALA2
STRINGVIT_07s0031g00220.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-65AP2 family protein