PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889629.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Nin-like

Protein Properties

Length: 336aa MW: 38697.3 Da PI: 9.5968

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.2	1e-25	202	251	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+ pi +A+++L+++lTvLKr+CR++GI+RWPhRkiks+ XP_015889629.1 202 ARIALSDLAKYFDVPIIEASRSLKIGLTVLKRKCREFGIPRWPHRKIKSI 251 789*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.951	186	272	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-21	204	251	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDSSNTHFLQ SLLVFSNSAN QELIRSLHKY RLDNGKGTEI ERLFVFSKNG PYMEMAAVPL 60 LKKSLKFRIS EVYEGFVHGL WVCIFAFHAG HRPSTTCFPS ILSISRNPKL KSIPSFANEL 120 QLIFQSSYIA EKKEPLLISP KSQTNNENHH QSKRSQPVLD QDLNCLPYSV TMSESAEEEQ 180 IDQSLPGTLE KKKKRAASDH IARIALSDLA KYFDVPIIEA SRSLKIGLTV LKRKCREFGI 240 PRWPHRKIKS IDSLIRDLQE EKCQQQEDTA AAIAVEKRQK MLESEKESIE RKPFLEIKSE 300 TKRFRQDVFK RRHRARALMS QDLTTSDSEN AYELQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889629.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889629.1	0.0	protein RKD5
Swissprot	O81791	4e-88	RKD5_ARATH; Protein RKD5
TrEMBL	A0A2P5BMN4	1e-157	A0A2P5BMN4_PARAD; RWP-RK domain containing protein
STRING	XP_010103258.1	1e-146	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-90	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]