PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LSD
Protein Properties Length: 189aa    MW: 20569.6 Da    PI: 7.1918
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.11.2e-12100124125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg Cr lL YPrGA++V+C++C+tV
  XP_015889610.1 100 CGACRRLLKYPRGARNVQCSCCQTV 124
                     ************************9 PP

2zf-LSD1322e-10138162125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+Y +GA+sVRC++C +V
  XP_015889610.1 138 CGSCAVLLMYQYGASSVRCSSCCFV 162
                     **********************776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-1697127IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-11100124IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.4E-9135163IPR005735Zinc finger, LSD1-type
PfamPF069434.1E-9138162IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATNDVDDDE GPPPGYQSIP PPPPAAPQPP PPQPQPQPQP QPQPLPQPQP LPQPQPQPLP  60
PPQLQPQPQP LPQLQPQPQP TLPTFTVTPP PVSEIAQMVC GACRRLLKYP RGARNVQCSC  120
CQTVNFVLEA YEIGQVKCGS CAVLLMYQYG ASSVRCSSCC FVTEIGAHNR RPPWSVQQGQ  180
PPLHPISFH
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889610.11e-126protein LOL2-like isoform X1
SwissprotO654269e-37LOL2_ARATH; Protein LOL2
TrEMBLM5WI022e-53M5WI02_PRUPE; Uncharacterized protein
STRINGXP_009352923.12e-55(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-38lsd one like 2