PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889610.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LSD

Protein Properties

Length: 189aa MW: 20569.6 Da PI: 7.1918

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.1	1.2e-12	100	124	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL YPrGA++V+C++C+tV XP_015889610.1 100 CGACRRLLKYPRGARNVQCSCCQTV 124 ************************9 PP
2	zf-LSD1	32	2e-10	138	162	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+Y +GA+sVRC++C +V XP_015889610.1 138 CGSCAVLLMYQYGASSVRCSSCCFV 162 **********************776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-16	97	127	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.1E-11	100	124	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.4E-9	135	163	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.1E-9	138	162	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MATNDVDDDE GPPPGYQSIP PPPPAAPQPP PPQPQPQPQP QPQPLPQPQP LPQPQPQPLP 60 PPQLQPQPQP LPQLQPQPQP TLPTFTVTPP PVSEIAQMVC GACRRLLKYP RGARNVQCSC 120 CQTVNFVLEA YEIGQVKCGS CAVLLMYQYG ASSVRCSSCC FVTEIGAHNR RPPWSVQQGQ 180 PPLHPISFH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889610.1	1e-126	protein LOL2-like isoform X1
Swissprot	O65426	9e-37	LOL2_ARATH; Protein LOL2
TrEMBL	M5WI02	2e-53	M5WI02_PRUPE; Uncharacterized protein
STRING	XP_009352923.1	2e-55	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-38	lsd one like 2